View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8853_low_10 (Length: 394)
Name: NF8853_low_10
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8853_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 33533700 - 33533317
Alignment:
| Q |
1 |
catcataagaactaacttggaataacacggatcgggatcaaacaattaactcaactagaaaacaacaattagctgattacctgcagaagcatggtaagtt |
100 |
Q |
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| T |
33533700 |
catcataagaactaacttggaataacacggatcgggatcaaacaattaactcaactagaaaacaacaattagctgattacctgcagaagcatggtaagtt |
33533601 |
T |
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| Q |
101 |
tgctgtctctaaaaggcacatgtgaatcaccatttgcaatagactcgaccactctcttcaatgctatatttccttgattaatttttgcagtctgtaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33533600 |
tgctgtctctaaaaggcacatgtgaatcaccatttgcaatagactcgaccactctcttcaatgctatatttccttgattaatttttgcagtctgtaaatt |
33533501 |
T |
|
| Q |
201 |
catcaacagtgttatatagtccatagagaacctgcaagattaaagaaagagaatcgatatggcagaaatataataacctgcatttttgcctcaaatccag |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33533500 |
catcaacagtgttatataatccatagagaacctgcaagattaaaaaaagagaatcgatatggcagaaatataataacctgcatttttgcctcaaatccag |
33533401 |
T |
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| Q |
301 |
tttgaccagcttgttcaatattttctgatcctgccatgtcgacaagcattagccgtcctcccacagttgggacatcaagtatta |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33533400 |
tttgaccagcttgttcaatattttctgatcctgccatgtcgacaagcattagccgtcctcccacagttgggacatcaagtatta |
33533317 |
T |
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