View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8853_low_12 (Length: 353)
Name: NF8853_low_12
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8853_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 31240930 - 31240610
Alignment:
| Q |
14 |
attatacttcacatgtatttctttatggattcaatagttatgtcgaggtattcatgcagattctcctaatgttattgaatgaagtagttgctggtttatt |
113 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31240930 |
attacacttcacatgtatatctttatggattcaatagttatgtcgaggtattcatgcagattctcctaatgttattgaacgaagtagttgctggtttatt |
31240831 |
T |
|
| Q |
114 |
aaagagaatgccttaactgtcaatgcaaaatgtctggcttccgatttattaggattaatgttataaaatctgttgaaaggagaaaattttctaatgaaaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31240830 |
aaagagaatgccttaactgtcaatgcaaaatgtctagcttccgacttattaggattaatgttataaaatctgttgaaaggagaaaattttctaatgaaaa |
31240731 |
T |
|
| Q |
214 |
acatggtttacgatgcgagtgggtgttgacctatttggtataaggagtcaggttatacgctatagggcatgagttcagcttctgctagtgtaagaaagtt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31240730 |
acatggtttacgatgcgagtgggtgttgacctatttggtataaggagtcaggttatacgctatagggcatgagttcagcttctgctagtgtaagaaagtt |
31240631 |
T |
|
| Q |
314 |
gttgataagtaacctctaagt |
334 |
Q |
| |
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|||| |||||||||||||||| |
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| T |
31240630 |
gttgctaagtaacctctaagt |
31240610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 7205903 - 7205818
Alignment:
| Q |
14 |
attatacttcacatgtatttctttatggattcaatagttatgtcgaggtattcatgcagattctcctaatgttattgaatgaagta |
99 |
Q |
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|||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||| |
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| T |
7205903 |
attacacttcacatgtatttgtttatggattctatagttatgtcgaggtattcaagtagattctcttaatgttattgaatgaagta |
7205818 |
T |
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