View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8853_low_13 (Length: 353)
Name: NF8853_low_13
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8853_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 333
Target Start/End: Original strand, 13471186 - 13471510
Alignment:
| Q |
12 |
agcagagagggtagcatgcatgcatgcttatcgattttcaccaccatatcctttggaagattattatttatatgaaattatgtatcaaaaacggcttcat |
111 |
Q |
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| T |
13471186 |
agcagagatggtagcatgcatgcatgcttatcgattttcaccaccatatcctttggaagattattatttatatgaaattatgtatcaaaaacggcttcat |
13471285 |
T |
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| Q |
112 |
caccagtatcatcagttgacagatttctgattcaggcatattatggtatgtagctatctac-aagagagaaactatagaaaggacaaaatttagttattt |
210 |
Q |
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| T |
13471286 |
caccagtatcatcagttgacagatttctgattcaggcatattatggtatgtagctatctacaaagagagaaactatagaaaggacaaaatttagttattt |
13471385 |
T |
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| Q |
211 |
ata-nnnnnnnnnnnnnnnnncatgacatttggattgagtcaagtagtcaaccctatg-ttcatatcagaagtgaaagtgattgttcatttgacgaacct |
308 |
Q |
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| T |
13471386 |
atattttttttatatttttttcatgacatttggattgagtcaagtagtcaaccctatgtttcatatcagaagtgaaagtgattgttcatttgacgaacct |
13471485 |
T |
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| Q |
309 |
taatacttgacgtaggataagtaaa |
333 |
Q |
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| T |
13471486 |
taatacttgacgtaggataagtaaa |
13471510 |
T |
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