View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8853_low_14 (Length: 329)
Name: NF8853_low_14
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8853_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 40505169 - 40505472
Alignment:
| Q |
9 |
gaaaagaaaattgattaaccttcaacaagttacatgatagcaatcaccaaggccgttttatagcaagttgagaaccaccgagtacatgtttggattgacg |
108 |
Q |
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| T |
40505169 |
gaaaagaaaattgattaaccttcaacaagttacatgatagcaatcaccaaggcctttttatagcaagttgagaaccaccaagtacatgtttggattgacg |
40505268 |
T |
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| Q |
109 |
gtgagattggcagaaccatggcgagtcaacgtaattttagcaaaagttgcacattggagtggtgaaccaccgtgattttatcgatctaacggtctatgta |
208 |
Q |
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| T |
40505269 |
gtgagattgacagaaccatggtgagtcaacgtaattttagcaaaagttgcacattggagtggtgaactaccgtgattttatcgatctaatggtctatgta |
40505368 |
T |
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| Q |
209 |
aacaaacactaattattagcataatgtatgaaaagagaataac-agtccgaggacagaaattgtttcaaggactcaagtggaagaagcaatagaacagga |
307 |
Q |
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| T |
40505369 |
aacaaacactaattattagcataatgtatgaaaagagaataacaagtccgaggacagaaattgtgtcaaggactcaagtggaagaagcaatagaacagga |
40505468 |
T |
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| Q |
308 |
atag |
311 |
Q |
| |
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|||| |
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| T |
40505469 |
atag |
40505472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 22137854 - 22137963
Alignment:
| Q |
202 |
ctatgtaaacaaacactaattattagcataatgtatgaaaagagaataaca-gtccgaggacagaaattgtttcaaggactcaagtggaagaagcaatag |
300 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22137854 |
ctatgtaaacaaacactaattattagcata-tgtatgaaaagagaataacaagtccgaggacagaaattgtgtcaaggactcaagtggaagaagcaatag |
22137952 |
T |
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| Q |
301 |
aacaggaatag |
311 |
Q |
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| T |
22137953 |
aacaggaatag |
22137963 |
T |
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