View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8853_low_15 (Length: 299)
Name: NF8853_low_15
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8853_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 30 - 283
Target Start/End: Original strand, 8744429 - 8744682
Alignment:
| Q |
30 |
attctacaaacaatgtaacatttacggcacagttgatttcatctttggtaacgctgctgcagtgttccaaaattgtaacatatttccaagaaaccctcca |
129 |
Q |
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| T |
8744429 |
attctacaaacaatgtaacatttacggtacagttgatttcatctttggtaacgctgctgcagtgttccaaaattgtaacatatttccaagaaaccctcca |
8744528 |
T |
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| Q |
130 |
aacaaagttaacacaatcactgcacaaggtagaacagatcctaaccaaaacactggcatttctattcacaattctagggttaccgctgcttcggatttga |
229 |
Q |
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| T |
8744529 |
aacaaagttaacacaatcactgcacaaggtagaacagatcctaaccaaaacactggcatttctattcacaattctagggtcaccgctgcttcggatttga |
8744628 |
T |
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| Q |
230 |
aaccggtccaaaattctgttaagacttatcttggaagaccatggaagcaatatt |
283 |
Q |
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| T |
8744629 |
aaccggtccaaaattctgttaagacttatcttggaagaccatggaagcaatatt |
8744682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 8767049 - 8767133
Alignment:
| Q |
41 |
aatgtaacatttacggcacagttgatttcatctttggtaacgctgctgcagtgttccaaaattgtaacatatttccaagaaaccc |
125 |
Q |
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| T |
8767049 |
aatgtaacatctatggcacagttgatttcatctttggtaacgccgcggtagttttgcaaaattgtaacattttcgcaagaaaccc |
8767133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 44463820 - 44463786
Alignment:
| Q |
143 |
caatcactgcacaaggtagaacagatcctaaccaa |
177 |
Q |
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| T |
44463820 |
caatcactgcacaaggaagaacagatcctaaccaa |
44463786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 8380780 - 8380727
Alignment:
| Q |
58 |
acagttgatttcatctttggtaacgctgctgcagtgttccaaaattgtaacata |
111 |
Q |
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| T |
8380780 |
acagttgatttcatctttggtaattcagctgttgtgttccaaaattgtgacata |
8380727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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