View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8853_low_2 (Length: 490)
Name: NF8853_low_2
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8853_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 5054252 - 5054650
Alignment:
| Q |
1 |
aacgactagaagtagtatatatttttggaaagaagta--------ggttgcaagttttgt-----------ttacaatgtaacgactttaaacggatatt |
81 |
Q |
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| T |
5054252 |
aacgactagaagtagtatatatttttggaaagaagtaccaacttgggttgcaagttttgtcatgaaccactttacaatgtaacgactttaaacggatatt |
5054351 |
T |
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| Q |
82 |
tcgtgaaagatttaaacatgtggtaaggatgaaatgagttaccctttggcattgccgtttccttcgccaaacaagtgcatgatgaaaatgtaagacttgg |
181 |
Q |
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| T |
5054352 |
tcgtaaaagatttaaacatgtggtaaggatgaaatgagttaccctttggcattgccgtttccttcgccaaacaattgcatgatgaaaatgtaagacttgg |
5054451 |
T |
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| Q |
182 |
tctctccaatcatatcttatgccatatcttactctttttctctttcatttgaacacttcatcatcagacatatattctaaccctcactcatcacatcaca |
281 |
Q |
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| T |
5054452 |
tctctccaatcatatcttatgccatatcttactctttttctctttcatttgaacacttcatcatcaaacatatattctaaccctcact-----catcaca |
5054546 |
T |
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| Q |
282 |
tcacaatacttgttacatacatacatactagatattctccagttacaaagattgggttttccacattatctgggttcgttgggtcccttattcactacta |
381 |
Q |
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| T |
5054547 |
tcacaatacttgt----tacatacatactagatattctccagttacaaagattgggttttccacattgtttgggttcgttgggtcccttattcactacta |
5054642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 475
Target Start/End: Original strand, 5054696 - 5054730
Alignment:
| Q |
441 |
tggtaaccttgtcttctgttcttatactcaaatct |
475 |
Q |
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| T |
5054696 |
tggtaaccttgtcttctgttcttatactcaaatct |
5054730 |
T |
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