View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8853_low_22 (Length: 248)
Name: NF8853_low_22
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8853_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 27807502 - 27807731
Alignment:
| Q |
1 |
ttgagctccatcttgaaatattatcttggtgatagattaatagagatagtggaaattttggtcttaaattttgaaattagagtggtaatcagataattag |
100 |
Q |
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| T |
27807502 |
ttgagctccatcttgaaatattatcttggtgatggattaatggagatagtggaaattttggtcttaaattttgaaattagagtggtaatcagataattag |
27807601 |
T |
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| Q |
101 |
tttctaaacaatttaaataatcagagaattatatgagggagttggacaacttcattctccattgtaatttcttttttcacttccatctgtttgagaccta |
200 |
Q |
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| T |
27807602 |
tttctaaacaatttaaataatcagagaattatatgagggagttggacaacttcattctccattgtaatttcttttttcacttccatctgtttgtgaccta |
27807701 |
T |
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| Q |
201 |
ttatgttgatatgttatgtttgttggagaat |
231 |
Q |
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| T |
27807702 |
ttatgttgatatgttatg-ttgttggagaat |
27807731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 27815290 - 27815436
Alignment:
| Q |
1 |
ttgagctccatcttgaaatattatcttggtgatagattaatagagatagtggaaattttggtcttaaattttgaaattagagtggtaatcagataattag |
100 |
Q |
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||||||||| | ||||||||||||| ||||||| | ||||| |||| || |||| | ||||||||||||||||||||| || ||||||| || ||||| |
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| T |
27815290 |
ttgagctccgtgttgaaatattatcatggtgatggtttaatggagagagctgaaaatatggtcttaaattttgaaattaaagcagtaatcaaatgattag |
27815389 |
T |
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| Q |
101 |
tttctaaacaatttaaataatcagagaattatatgagggagttggac |
147 |
Q |
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| T |
27815390 |
tttctaaacaatttaaataatgagagaattatatgacagagttggac |
27815436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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