View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8853_low_23 (Length: 241)
Name: NF8853_low_23
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8853_low_23 |
 | |
|
| [»] scaffold0154 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 11350782 - 11351002
Alignment:
| Q |
3 |
gattatacttcaaaccgtaactctgcaggttgaacatgaggatcaatggctttggaagttggatctagctgttggttattcagttagtggtgagtaccag |
102 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11350782 |
gattttacttcaaaccgtaactttgcaggttgaacatgatgatcaatggctttggaagttggatctagctgttggttattcagttagtggtgagtatcag |
11350881 |
T |
|
| Q |
103 |
ttttttactagctacgctcctggtccaacttcatcggttctgaatcccttttgccataaacatgtccccttgaaggtgttggtgtttgcgtagtggctct |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11350882 |
ttttttactagctacgctcctggtccaacttcatcagttctgaatctcttttgccataaacatgtccccttgaaggtgttggtgtttgcgtagtggctct |
11350981 |
T |
|
| Q |
203 |
tacgcaatagaccgacaacta |
223 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
11350982 |
tacgcaatagactgacaacta |
11351002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 20799 - 20859
Alignment:
| Q |
132 |
ttcatcggttctgaatcccttttgccataaacatgtccccttgaaggtgttggtgtttgcg |
192 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||||| |
|
|
| T |
20799 |
ttcatcggttctgaatctctttttccataaacatgtttctttgaaggtgttggtgtttgcg |
20859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 203
Target Start/End: Original strand, 41368136 - 41368338
Alignment:
| Q |
3 |
gattatacttcaaaccgtaactctgcaggttgaacatgaggatcaatggctttggaagttggatctagctgttggttattcagttagtggtgag--tacc |
100 |
Q |
| |
|
|||| ||||||||| ||||| |||||||||||||| |||||||| | ||||||||||||||| ||| || ||| || ||||| |||||| | ||| |
|
|
| T |
41368136 |
gattttacttcaaaatataactttgcaggttgaacataaggatcaacgactttggaagttggatttagttggtggatacacagttggtggtgcgcatact |
41368235 |
T |
|
| Q |
101 |
agttttttactagctacgctcctggtccaacttcatcggttctgaatcccttttgccataaacatgtccccttgaaggtgttggtgtttgcgtagtggct |
200 |
Q |
| |
|
|||| ||||||||||| |||| |||| ||||||| ||| ||| | ||||| ||||||||| |||||||||||||| |||||| ||| ||| || |
|
|
| T |
41368236 |
tgtttcttactagctacactccaggtcatgtttcatcgattccaaatatatcttgccttaaacatgttcccttgaaggtgttagtgttttcgtggtgact |
41368335 |
T |
|
| Q |
201 |
ctt |
203 |
Q |
| |
|
||| |
|
|
| T |
41368336 |
ctt |
41368338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University