View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8853_low_5 (Length: 429)
Name: NF8853_low_5
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8853_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 2480376 - 2479962
Alignment:
| Q |
1 |
ggagtctggcaaaaaggagcaggatcacattctgactctaattggatcttaagggtggagcttggnnnnnnncatgaagatagtcatgaatcaaattatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2480376 |
ggagtctggcaaaaaggagcaggatcacattctgactctaattggatcttaagggtggagcttggaaagaaacatgaagatagtcatgaatcaaattatg |
2480277 |
T |
|
| Q |
101 |
tgtcatcatcagaaaaatcagcacctaataatagtacaattgttggtgattgtgctgagaaaaatgggatagaacatgaagaggatattgttaccatgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2480276 |
tgtcatcatcagaaaaatcagcacctaataatagtacaattgttggtgattgtgctgagaaaaatgggatagaacatgaagaggatattgttaccatgca |
2480177 |
T |
|
| Q |
201 |
gatgattgaagagctacttaattgaaacttcaagtaaccttcaggagtctgatgttacttctataatatataatattaataacatactattgtactgtat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2480176 |
gatgattgaagagctacttaattgaaacttcaagtaaccttcaggagtctgatgttacttctataatatataatattaataacatactattgtactgtat |
2480077 |
T |
|
| Q |
301 |
aaaagaactcctttttaggttactctcaaatcaatttgtcttcaaagaactccttttcacttacagtatgaaacacttttgtggaccatatccctaacta |
400 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2480076 |
taaagaactcctttttaggttactctgaaatcaatttgtcttcaaagaactccttttcacttacagtatgaaacacttttgtggaccatatccctaacta |
2479977 |
T |
|
| Q |
401 |
agcactaatcttatt |
415 |
Q |
| |
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||| ||||||||||| |
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| T |
2479976 |
agctctaatcttatt |
2479962 |
T |
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