View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8853_low_6 (Length: 418)
Name: NF8853_low_6
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8853_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Complemental strand, 9070949 - 9070578
Alignment:
| Q |
19 |
acaattgccttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaaccggatatcaaaatgttcttcttcaactg |
118 |
Q |
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| T |
9070949 |
acaattgccttccaaaaaagtttttgatactcaacaattcatcatttcgaccttaccggtttgattctgaactggatatcaaaatcttcttcttcaactg |
9070850 |
T |
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| Q |
119 |
ctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgctgattcggacgaa |
218 |
Q |
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| T |
9070849 |
cttttcagttaggaaacaacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgctgattcggacgaa |
9070750 |
T |
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| Q |
219 |
gatatcgttgatttggaccttgtatcttgtaccaagatgtccgacgtcaacgcgtctatgataggatcagacctgaggtctaattttctcagtttgagtt |
318 |
Q |
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| T |
9070749 |
gatatcgttgatttggaccttctatcttgtactaagatgttcgacgtcaacgcgtctatgatgggatcagacctgaggtataattttctcagattgagtt |
9070650 |
T |
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| Q |
319 |
ggcccaaacaaagttgtgcaaagtgcgagtcaaaaggcatgaaatgcaaatggatgaacaataccaccaaac |
390 |
Q |
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| T |
9070649 |
ggcccaaacaaagttgtgcaaagtgcgagtcaaaaggcatgaaatgcaaatggatgaacaacaccaccaaac |
9070578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 8862719 - 8862628
Alignment:
| Q |
108 |
ttcttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaattta |
199 |
Q |
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| T |
8862719 |
ttcttcaattgctcttcagttaggaaacaacacttgagaaaccatgatcaaacatcccaagagtcgcaagatatgatcacctgtccagttta |
8862628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 111 - 257
Target Start/End: Complemental strand, 9087154 - 9087008
Alignment:
| Q |
111 |
ttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgctgatt |
210 |
Q |
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|||||||||||||| |||| ||||||||| ||||||||||||||||||| | | |||| ||||||||||||||||||||||||||||| | | || ||| |
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| T |
9087154 |
ttcaactgctcttcggttaagaaacgacatttgagaaaccaatatcagataaacaaagattcacaagatatgatcacttgtccaatttacgcttcttatt |
9087055 |
T |
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| Q |
211 |
cggacgaagatatcgttgatttggaccttgtatcttgtaccaagatg |
257 |
Q |
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| T |
9087054 |
ctgatgaaagtgtcgtcaagttggaccttgcatcatgtaccaagatg |
9087008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 9126305 - 9126200
Alignment:
| Q |
106 |
tcttcttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgc |
205 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||| | |||| || ||||| |||||||||||||||||| ||||||||||| | ||| |
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| T |
9126305 |
tcttcttcaactgctcttcggttaggaaacgacacctgagaaactacgatcaattattccaagggtcacaagatatgatcacatgtccaatttacgctgc |
9126206 |
T |
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| Q |
206 |
tgattc |
211 |
Q |
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|||||| |
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| T |
9126205 |
tgattc |
9126200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 8866588 - 8866497
Alignment:
| Q |
108 |
ttcttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaattta |
199 |
Q |
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|||||||| || |||||| ||| |||||||||| |||||||| || |||| |||| ||| |||||||||||||||||| ||||||||||| |
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| T |
8866588 |
ttcttcaattgttcttcatttaagaaacgacacctgagaaacgaagatcaatcatctcaacggtcacaagatatgatcacctgtccaattta |
8866497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 8980134 - 8980043
Alignment:
| Q |
108 |
ttcttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaattta |
199 |
Q |
| |
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||||| ||||||||||| ||| |||||| |||| ||||||||||| ||||| ||| |||| ||| |||| ||||||| || ||||||||||| |
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| T |
8980134 |
ttctttaactgctcttctgttgggaaacaacacctgagaaaccaagatcagtcattccaaaagttacaaaatatgattacctgtccaattta |
8980043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 9109113 - 9108990
Alignment:
| Q |
19 |
acaattgccttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaaccggatatcaaaatgttcttcttcaactg |
118 |
Q |
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|||||||||||| ||||| |||||| || ||||||| |||||||||| ||||||| | ||| |||| ||| | |||| | ||| | ||||| |||||| |
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| T |
9109113 |
acaattgccttcaaaaaatgttttt-atgctcaacagttcatcattttgaccttacagattttattcagaatcaaatataataatttccttctccaactg |
9109015 |
T |
|
| Q |
119 |
ctcttcagttaggaaacgacacttg |
143 |
Q |
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||||||||||| |||||| |||||| |
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| T |
9109014 |
ctcttcagttaagaaacggcacttg |
9108990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 8862534 - 8862454
Alignment:
| Q |
299 |
taattttctcagtttgagttggcccaaacaaagttgtgcaaagtgcgagtcaaaaggcatgaaatgcaaatggatgaacaa |
379 |
Q |
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|||||||||| ||| |||||||| ||||| | |||| ||| |||||| |||| ||||||||||||||||||| |||||| |
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| T |
8862534 |
taattttctctctttaagttggccgaaacataattgtacaaggtgcgaagcaaatggcatgaaatgcaaatggaagaacaa |
8862454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 8866401 - 8866329
Alignment:
| Q |
307 |
tcagtttgagttggcccaaacaaagttgtgcaaagtgcgagtcaaaaggcatgaaatgcaaatggatgaacaa |
379 |
Q |
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|||||||||||||||| |||||| |||| |||| ||| | | ||| |||||||||||||||||| |||||| |
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| T |
8866401 |
tcagtttgagttggcctgaacaaaattgtacaaaatgcaaagctaaaagcatgaaatgcaaatggaagaacaa |
8866329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 9108945 - 9108905
Alignment:
| Q |
214 |
acgaagatatcgttgatttggaccttgtatcttgtaccaag |
254 |
Q |
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| T |
9108945 |
acgaagatatcgttgatttgaaccttgtattgtgtaccaag |
9108905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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