View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8853_low_7 (Length: 411)
Name: NF8853_low_7
Description: NF8853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8853_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 6 - 397
Target Start/End: Complemental strand, 37613488 - 37613097
Alignment:
| Q |
6 |
agaagcagagaaatttgttacaattactgaatcacctctaaaacttattcctggtctcccttttttattgcaagttatggttcccttaaattttttaagg |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37613488 |
agaaacagagaaatttgttacaattactgaatcacctctaaaaattattcctggcctcccttttttaatgcaagttatggttcccttaaattttttaagg |
37613389 |
T |
|
| Q |
106 |
aaaccaataaggttaaaaataagactcagtgcagatgattgctttaaatcatcacgctcaaaggatgcttcaagtctcctacatgaagcatatgttttcc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37613388 |
aaaccaataaggttaaaaataagactcagtgcagatgattgctttaaatcatcacgctcaaaggatgcttcaagtctcctacatgaagcatatgttttcc |
37613289 |
T |
|
| Q |
206 |
tagggcaacttttctgttgccaagttcatcaaccacactcaaatctttacaaacatctactttgaaactgaccagtgcttctgattttcctgtaaagtgt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37613288 |
tagggcaacttttctgttgccaagttcatcaaccacactcaaatctttacaaacatctactttgaaactgaccagtgcttctgattttcctgtaaagtgt |
37613189 |
T |
|
| Q |
306 |
actttttcgaaagccaacaagtgtttctgaggtgcattgtgcactgcaggaggagtagagaacaaaaacactgtttggctactgctcatttt |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37613188 |
actttttcgaaagccaacaagtgtttctgaggtgcattgtgcactgcaggaggagtagagaacaaaaacactgtttggctactgctcatttt |
37613097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 151 - 397
Target Start/End: Original strand, 1367289 - 1367535
Alignment:
| Q |
151 |
aaatcatcacgctcaaaggatgcttcaagtctcctacatgaagcatatgttttcctagggcaacttttctgttgccaagttcatcaaccacactcaaatc |
250 |
Q |
| |
|
||||| |||| ||||| | ||||||||||| ||| ||||||||||| || | || | | |||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
1367289 |
aaatcctcacactcaatgaatgcttcaagtttccaacatgaagcatgtggtcccccaatggaacttttctgttaccaagttcatcaacaacactcaaatc |
1367388 |
T |
|
| Q |
251 |
tttacaaacatctactttgaaactgaccagtgcttctgattttcctgtaaagtgtactttttcgaaagccaacaagtgtttctgaggtgcattgtgcact |
350 |
Q |
| |
|
|| ||||||||||| ||||| || |||| | ||||||||||||||| || || || ||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1367389 |
attgcaaacatctaccttgaacctaaccattccttctgattttcctgccaattgcaccttttcaaaacccaacaagtgtttctgaggtgcattgtgcaca |
1367488 |
T |
|
| Q |
351 |
gcaggaggagtagagaacaaaaacactgtttggctactgctcatttt |
397 |
Q |
| |
|
|||||| ||| |||| || ||||||| |||||||| |||||||| |
|
|
| T |
1367489 |
ttaggaggggtaaagaataacaacactgaatggctactactcatttt |
1367535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University