View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8855_high_1 (Length: 450)
Name: NF8855_high_1
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 9 - 434
Target Start/End: Complemental strand, 7685524 - 7685099
Alignment:
| Q |
9 |
agcatagaagatggaaacgtacatannnnnnnaacataatctgtttgtctgcaacatgtttgagtacaatttattatgctatgaatcacttgatttgatc |
108 |
Q |
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| T |
7685524 |
agcatagaagatggaaacgtacatatttttttaacataatctgtttgtctgcaacatgtttgagtacaatttattatgctatgaatcacttgatttgatc |
7685425 |
T |
|
| Q |
109 |
aatcccccaactttgttcgaactagatgaaatgattctgaaagcagcatggttcaaaaatttgctaacttgttttatatctgtatatactacacacgatt |
208 |
Q |
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| T |
7685424 |
aatcccccaactttgttcgaactagatgaaatgattctgaaagcagcatggttcaaaaatttgctaacttgttttatatctgtatatactacacacgatt |
7685325 |
T |
|
| Q |
209 |
tcttgtttggaatagcttttgacaaatggaagaaattattataattcagagatgaacaaaatacacgaaggacnnnnnnnnnggcggtgaaattctagag |
308 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7685324 |
tctcgtttggaatagcttttgacaaatggaagaaattattataattcagagatgaacaaaatacacgaaggacaaaaaaaaaggcggtgaaattctagag |
7685225 |
T |
|
| Q |
309 |
ttttttatattgattgtattccaagtgaatgtacaaggctcttaattagacctaatcaaagatatgttgcaaaactcagtgaagctgcaagaatgaaaat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7685224 |
ttttttatattgattgtattccaagtgaatgtacaaggctcttaattagacctaatcaaagatatgttgcaaaactcagtgaagctgcaagaatgaaaat |
7685125 |
T |
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| Q |
409 |
ggagaagagcccctcgaagtcattta |
434 |
Q |
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| T |
7685124 |
ggagaagagcccctcgaagtcattta |
7685099 |
T |
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