View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8855_high_23 (Length: 241)
Name: NF8855_high_23
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34398092 - 34398334
Alignment:
| Q |
1 |
tcaaggcattcctctattctcaacgaattcatttcactattctatctatcatttgttagttaaatgttgttactttttgcattggcaggtttggttgttg |
100 |
Q |
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| T |
34398092 |
tcaaggcattcctctattctcaacgaattcatttcactattctatctatcatttgttagttaaatgttgttactttttgcattggcaggtttggttgttg |
34398191 |
T |
|
| Q |
101 |
gatcagttcggtgttctccacgatggaaaacaaccttatcctggtgccatttcaacatgtatg---------tatgttatta----------ttatggtt |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| |||||||| |
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| T |
34398192 |
gatcagttcggtgttctccacgatggaaaacaaccttatcctggtgctatttcaacatgtatgttttcatcctatcttattatgtcttatctttatggtt |
34398291 |
T |
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| Q |
182 |
ggtttctattgtccaaccacataagtatacatgatcctaaatt |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34398292 |
ggtttctattgtccaaccacataagtatacatgatcctaaatt |
34398334 |
T |
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