View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8855_high_4 (Length: 389)
Name: NF8855_high_4
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 285 - 376
Target Start/End: Original strand, 45386947 - 45387038
Alignment:
| Q |
285 |
gttatcattaaaaacctctcccatggcttcaagtttcacaaaaggaatctgcctctaagataagcttcgtgcaactatcacttatgccgtct |
376 |
Q |
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| T |
45386947 |
gttatcattagaaacctctcccatggcttcaagtttcacaaaaggaatctgcctctaagataagcttcgtgcaactatcacttatgccgtct |
45387038 |
T |
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Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 45386681 - 45386762
Alignment:
| Q |
19 |
cgacgaactttccgagcacagccttcacaatgcatgaaaattctcagcaaaatctctgctggaggcggtggagttgcagcag |
100 |
Q |
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| T |
45386681 |
cgacgaactttccgagcacagccttcacaatgcatgaaaactctcagcaaaatctctgctggaggcggtggagttgcagcag |
45386762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 45391050 - 45391114
Alignment:
| Q |
19 |
cgacgaactttccgagcacagccttcacaatgcatgaaaattctcagcaaaatctctgctggagg |
83 |
Q |
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| T |
45391050 |
cgacgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctgccggagg |
45391114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 734658 - 734722
Alignment:
| Q |
19 |
cgacgaactttccgagcacagccttcacaatgcatgaaaattctcagcaaaatctctgctggagg |
83 |
Q |
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| T |
734658 |
cgacgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctgccggagg |
734722 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 40578185 - 40578224
Alignment:
| Q |
17 |
aacgacgaactttccgagcacagccttcacaatgcatgaa |
56 |
Q |
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| T |
40578185 |
aacgacgaactttacgagcacaaccttcacaatgcatgaa |
40578224 |
T |
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