View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8855_low_10 (Length: 349)

Name: NF8855_low_10
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8855_low_10
NF8855_low_10
[»] scaffold0101 (2 HSPs)
scaffold0101 (18-339)||(31504-31825)
scaffold0101 (76-207)||(21327-21461)
[»] chr8 (14 HSPs)
chr8 (24-246)||(17258009-17258227)
chr8 (54-246)||(17240719-17240908)
chr8 (52-205)||(42376211-42376365)
chr8 (43-207)||(17248614-17248780)
chr8 (259-321)||(17247406-17247468)
chr8 (190-246)||(17247519-17247571)
chr8 (95-251)||(17239810-17239965)
chr8 (259-321)||(17240607-17240669)
chr8 (259-317)||(17247268-17247326)
chr8 (56-155)||(17248327-17248428)
chr8 (95-251)||(17257207-17257362)
chr8 (259-305)||(17257915-17257961)
chr8 (218-252)||(17309595-17309629)
chr8 (123-155)||(42376728-42376760)


Alignment Details
Target: scaffold0101 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 31825 - 31504
Alignment:
Q  18 ttgatgactagaacggtttgatacgaaaatggggaatggctccagatagataaatcagtttattcgatgattcgttctttattactttaatttctgggtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31825 ttgatgactagaacggtttgatacgaaaatggggaatggctccagatagataaatcagtttattcgatgattcgttctttattactttaatttctgggtt 31726  T
Q  118 tttactgcaagacatgcaaattgaattttcaacatgttttattgcagcgtgtttgtcaaactactacctgcttgatgcatggagcctagcgttttgattg 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31725 tttactgcaagacatgcaaattgaattttcaacatgttttcttgcagcgtgtttgtcaaactactacctgcttgatgcatggagcctagcgttttaattg 31626  T
Q  218 atttggtgatctctattaaattcttttcagtttatgatttgttttaccttctttggtgttgcaggaaaagtaattttgtagcatacgattacttatggtt 317  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||    
T  31625 atttggtgatctttattaaattcttttcattttatgatttgttttaccttctttggtgtcgcaggaaaagtaattttgtaacatacgattacttatgatt 31526  T
Q  318 atatcatatgcacacgtctctg 339  Q
    ||||||||||||| | ||||||    
T  31525 atatcatatgcactcctctctg 31504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 21461 - 21327
Alignment:
Q  76 tttattcgatgattcgttctttattactttaatttctgggtttttactgcaagacatgcaaattgaattttcaacatgttttattgcagcgt-gtttgtc 174  Q
    ||||||| ||||| |||||||||||| |||| |||||||| ||  | |||||| ||| | ||||||||||| ||||||||||  |||||| | |||||||    
T  21461 tttattcaatgatccgttctttattattttattttctgggcttcaattgcaagtcatacgaattgaattttgaacatgtttttctgcagcatcgtttgtc 21362  T
Q  175 aaactact-acctgcttgat-gcatggagcctagc 207  Q
    | |||| | |||||||| || ||||||||||||||    
T  21361 acactaataacctgcttcatggcatggagcctagc 21327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 17258227 - 17258009
Alignment:
Q  24 actagaacggtttgatacgaaaatggggaatggctccagatagataaatcagtttattcgatgattcgttctttattactttaatttctgggtttttact 123  Q
    |||||||||| ||||||| || ||  ||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||    
T  17258227 actagaacggcttgatac-aacatacggaatggctccagatagataaatcaatttattcaatgatttgttctttattactttaatttctgggtttttact 17258129  T
Q  124 gcaagacatgcaaattgaattttcaacatgttttattgcagcgt-gtttgtcaaactactacctgcttgatgcatggagcctagcgttttgattgatttg 222  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||| |||||||||||||||||||||||||||||    ||||||||    
T  17258128 gcaagacatgcaaattgaattttcaacatgttttcttgcagcgtggtttgttaaactattacctgcttgatgcatggagcctagcgtt----ttgatttg 17258033  T
Q  223 gtgatctctattaaattcttttca 246  Q
    ||||||| || |||||||||||||    
T  17258032 gtgatctgtaataaattcttttca 17258009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 54 - 246
Target Start/End: Complemental strand, 17240908 - 17240719
Alignment:
Q  54 tggctccagatagataaatcagtttattcgatgattcgttctttattactttaatttctgggtttttactgcaagacatgcaaattgaattttcaacatg 153  Q
    ||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17240908 tggctccagatagataaatcaatttattcagtgattcgttctttattactttaatttctgggtttttactgcaaggcatgcaaattgaattttcaacatg 17240809  T
Q  154 ttttattgcagcgt-gtttgtcaaactactacctgcttgatgcatggagcctagcgttttgattgatttggtgatctctattaaattcttttca 246  Q
    |||| |||| |||| |||||| |||||| |||||||||||||||||||||||||||||    ||||||||||||||| ||||||||||||||||    
T  17240808 ttttcttgctgcgtggtttgttaaactattacctgcttgatgcatggagcctagcgtt----ttgatttggtgatctgtattaaattcttttca 17240719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 52 - 205
Target Start/End: Complemental strand, 42376365 - 42376211
Alignment:
Q  52 aatggctccagatagataaatcagtttattcgatgattcgttctttattactttaatttctgggtttttactgcaagacatgcaaattgaattttcaaca 151  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||    
T  42376365 aatggctccagatagataaatcagtttattcaatgattcgttctttattactttaatttttgggtttttgctgcaagtcatgcaaattgaattttcaaca 42376266  T
Q  152 tgttttattgcagcgt-gtttgtcaaactactacctgcttgatgcatggagccta 205  Q
    ||||||  |||||||| |||||| |||||| || ||| |||||||||||||||||    
T  42376265 tgttttcctgcagcgtggtttgtaaaactattatctgattgatgcatggagccta 42376211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 43 - 207
Target Start/End: Complemental strand, 17248780 - 17248614
Alignment:
Q  43 aaaatggggaatggctccagatagataaatcagtttattcgatgattcgttctttattactttaatttctgggtttttactgcaagacatgcaaattgaa 142  Q
    ||||||| ||||| || ||||||||||||||||||||||| |||||||||||||| |||| || ||||||||||||||||||||||| ||||||||||||    
T  17248780 aaaatggagaatgtcttcagatagataaatcagtttattcaatgattcgttctttgttacatttatttctgggtttttactgcaagagatgcaaattgaa 17248681  T
Q  143 ttttcaacatgttttattgcagcgt-gtttgtcaaact-actacctgcttgatgcatggagcctagc 207  Q
    |||||||||||||||  |||||||| |||||| | ||| |  |||||||||||||||||||| ||||    
T  17248680 ttttcaacatgttttgctgcagcgtggtttgttacactaaaaacctgcttgatgcatggagcgtagc 17248614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 17247468 - 17247406
Alignment:
Q  259 ttttaccttctttggtgttgcaggaaaagtaattttgtagcatacgattacttatggttatat 321  Q
    ||||||| |||| ||| |||||||||||||||||||||| ||||||||| ||| |||||||||    
T  17247468 ttttaccctcttaggtcttgcaggaaaagtaattttgtaacatacgatttcttctggttatat 17247406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 17247571 - 17247519
Alignment:
Q  190 tgatgcatggagcctagcgttttgattgatttggtgatctctattaaattcttttca 246  Q
    |||||||||||||||||||||||||||    ||||||||| ||||||||||||||||    
T  17247571 tgatgcatggagcctagcgttttgatt----tggtgatctgtattaaattcttttca 17247519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 251
Target Start/End: Complemental strand, 17239965 - 17239810
Alignment:
Q  95 tttattactttaatttctgggtttttactgcaagacatgcaaattgaattttcaacatgttttattgcagcgt-gtttgtcaaactact-acctgctt-g 191  Q
    ||||||| ||||||||||||| ||  | |||||||||| | ||||||||||| ||||||||||  |||||| | |||||||| |||| | |||||||| |    
T  17239965 tttattattttaatttctgggcttcaattgcaagacatacgaattgaattttgaacatgttttcctgcagcatggtttgtcacactaataacctgcttcg 17239866  T
Q  192 atgcatggagcctagcgttttgattgatttggtgatctctattaaattcttttcagttta 251  Q
      ||||||| |||||| ||    |||||||||||||  ||||| ||||||||||| ||||    
T  17239865 tggcatggaacctagcatt----ttgatttggtgataactatttaattcttttcatttta 17239810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 17240669 - 17240607
Alignment:
Q  259 ttttaccttctttggtgttgcaggaaaagtaattttgtagcatacgattacttatggttatat 321  Q
    ||||||| |||||||| ||| |||||||||||||| ||| ||||||||| ||| |||||||||    
T  17240669 ttttaccctctttggtcttgtaggaaaagtaatttcgtaacatacgatttcttctggttatat 17240607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 17247326 - 17247268
Alignment:
Q  259 ttttaccttctttggtgttgcaggaaaagtaattttgtagcatacgattacttatggtt 317  Q
    ||||||| || ||||| |||||||||||||||||||||| ||||||||| ||| |||||    
T  17247326 ttttaccctcgttggtcttgcaggaaaagtaattttgtaacatacgatttcttctggtt 17247268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 17248428 - 17248327
Alignment:
Q  56 gctccagatagataaa--tcagtttattcgatgattcgttctttattactttaatttctgggtttttactgcaagacatgcaaattgaattttcaacatg 153  Q
    ||||||||||||||||  ||| ||| ||| ||||| | |||||||||| ||||||||||||| ||  | |||||||||| |  |||||||||| ||||||    
T  17248428 gctccagatagataaaaatcaatttcttcaatgatccattctttattaatttaatttctgggcttcaattgcaagacatacggattgaatttttaacatg 17248329  T
Q  154 tt 155  Q
    ||    
T  17248328 tt 17248327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 251
Target Start/End: Complemental strand, 17257362 - 17257207
Alignment:
Q  95 tttattactttaatttctgggtttttactgcaagacatgcaaattgaattttcaacatgttttattgcagcgt-gtttgtcaaactact-acctgctt-g 191  Q
    ||||||| ||||||||||||| ||  | |||||||||| | ||||||||||| ||||||||||  |||||| | |||||||| |||| | |||||||| |    
T  17257362 tttattattttaatttctgggcttcaattgcaagacatacgaattgaattttgaacatgttttcctgcagcatggtttgtcacactaataacctgcttcg 17257263  T
Q  192 atgcatggagcctagcgttttgattgatttggtgatctctattaaattcttttcagttta 251  Q
      ||||||| |||||| ||    |||||||||||||  ||||| ||||||||||| ||||    
T  17257262 tggcatggaacctagcatt----ttgatttggtgataactatttaattcttttcatttta 17257207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 17257961 - 17257915
Alignment:
Q  259 ttttaccttctttggtgttgcaggaaaagtaattttgtagcatacga 305  Q
    ||||||| |||||||| |||||||||||||||||||||| |||||||    
T  17257961 ttttaccctctttggtcttgcaggaaaagtaattttgtaacatacga 17257915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 17309629 - 17309595
Alignment:
Q  218 atttggtgatctctattaaattcttttcagtttat 252  Q
    ||||||||||||||||||||||||||||| |||||    
T  17309629 atttggtgatctctattaaattcttttcattttat 17309595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 42376760 - 42376728
Alignment:
Q  123 tgcaagacatgcaaattgaattttcaacatgtt 155  Q
    |||||||||||||||||||||||| ||||||||    
T  42376760 tgcaagacatgcaaattgaattttaaacatgtt 42376728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University