View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8855_low_12 (Length: 330)
Name: NF8855_low_12
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 24 - 323
Target Start/End: Original strand, 4441807 - 4442108
Alignment:
| Q |
24 |
tcccggacaaaacatttagtgttgagtggttcaacaaccaaggtaaattagtcttatgttagttatttgaagtttgcttcatcatttatatagagtaagt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |
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| T |
4441807 |
tcccggacaaaacatttagtgttgagtggttcaacaaccaaggtaaattagtcttatgttagttatttgatgtttgctttatcatatatatagagtaagt |
4441906 |
T |
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| Q |
124 |
tagtaactaactaacgaaaaattatatctttactaatcatgatttctttatagatagatat--agttttgtactaattgctacttgataatgtggacgaa |
221 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4441907 |
tagtaactaactaacgaaaagttatatctctactaatcatgatttctttatagatatatatatagttttgtactaattgctacttgataatgtggacgaa |
4442006 |
T |
|
| Q |
222 |
cagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctatttgcttcatttagagctcattcttccctggtttaactccaattctctgc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4442007 |
cagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctatttgcttcatttagagctcattcttccctggtttaactccaattatctgc |
4442106 |
T |
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| Q |
322 |
tt |
323 |
Q |
| |
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|| |
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| T |
4442107 |
tt |
4442108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 172 - 322
Target Start/End: Original strand, 17478260 - 17478410
Alignment:
| Q |
172 |
tatagatagatatagttttgtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgcta |
271 |
Q |
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|||||||||||||| ||||||||||||| || ||| | || || |||||||||||||||||||||| | ||||| ||||||||||||||| ||| |
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| T |
17478260 |
tatagatagatatatttttgtactaattagtagttggtgtcttgtacaaacagtggctgcttggtgaaccccacaatctactttttcaagaatttcacta |
17478359 |
T |
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| Q |
272 |
tttgcttcatttagagctcattcttccctggtttaactccaattctctgct |
322 |
Q |
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| T |
17478360 |
tttgatacgtctagagctcattcttctctggtttaactccaattctctgct |
17478410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 306
Target Start/End: Complemental strand, 32849402 - 32849272
Alignment:
| Q |
177 |
atagatatagttttgtactaattgctacttgataatgtgg-acgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctatttg |
275 |
Q |
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||||||||||||||||||||||| ||||||||| | | | || ||||||||||||||| |||||| | ||||||| |||||||||||||||| ||||| |
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| T |
32849402 |
atagatatagttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttg |
32849303 |
T |
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| Q |
276 |
cttcatttagagctcattcttccctggttta |
306 |
Q |
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||| |||||||||||||||||||||||| |
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| T |
32849302 |
gttcgcctagagctcattcttccctggttta |
32849272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 172 - 319
Target Start/End: Complemental strand, 8382789 - 8382642
Alignment:
| Q |
172 |
tatagatagatatagttttgtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgcta |
271 |
Q |
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|||||||| |||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||| || | |
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| T |
8382789 |
tatagatatatatggttttgtactaattaatacttgacaatgcggacgaacagtggctgcttggtgaaccccgtgatctactttttcaagaattttgcaa |
8382690 |
T |
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| Q |
272 |
tttgcttcatttagagctcattcttccctggtttaactccaattctct |
319 |
Q |
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||||||||||||||| |||| |||||||||||||| |||||||||||| |
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| T |
8382689 |
tttgcttcatttagatctcactcttccctggtttagctccaattctct |
8382642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 180 - 319
Target Start/End: Complemental strand, 8366778 - 8366639
Alignment:
| Q |
180 |
gatatagttttgtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctatttgcttc |
279 |
Q |
| |
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||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||||||| ||| ||||| |||||| |
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| T |
8366778 |
gatatggttttgtactaattaatacttgacaatgcggacgaacagtggctgcttggtgaaccccgtgatctactttttcaagatttttgctatctgcttc |
8366679 |
T |
|
| Q |
280 |
atttagagctcattcttccctggtttaactccaattctct |
319 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||||||| |
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| T |
8366678 |
atttagatatcattcttccctggtttgactccaattctct |
8366639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 8382901 - 8382806
Alignment:
| Q |
31 |
caaaacatttagtgttgagtggttcaacaaccaaggtaaattagtcttatgttagttatttgaagtttgcttcatcatttatatagagtaagttagtaa |
129 |
Q |
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|||||||| |||| ||||||| ||||||||||||||| || || |||| |||||||||||| |||| |||||| |||||||| | |||||||||||| |
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| T |
8382901 |
caaaacatctagttttgagtgattcaacaaccaaggttaa---gttttattttagttatttgatgtttacttcataatttatatggtgtaagttagtaa |
8382806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 8366905 - 8366821
Alignment:
| Q |
28 |
ggacaaaacatttagtgttgagtggttcaacaaccaaggtaaattagtcttatgttagttatttgaagtttgcttcatcatttatata |
115 |
Q |
| |
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||||||||||| |||| ||||| | ||||||||||||||| ||||| |||| | ||||||||| |||| |||||||||||||||| |
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| T |
8366905 |
ggacaaaacatctagttttgagagtttcaacaaccaaggt---ttagttttatttcagttatttgttgtttacttcatcatttatata |
8366821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 173 - 319
Target Start/End: Original strand, 8341314 - 8341460
Alignment:
| Q |
173 |
atagatagatatagttttgtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctat |
272 |
Q |
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|
||||||||||||||||||||||||||| |||||||||| ||| || ||||||||||||| |||||||| | ||| | ||||||||||||||| ||| |
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| T |
8341314 |
atagatagatatagttttgtactaattactacttgatatcgtgtacaaacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatat |
8341413 |
T |
|
| Q |
273 |
ttgcttcatttagagctcattcttccctggtttaactccaattctct |
319 |
Q |
| |
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||| ||| | |||||| ||||| ||||||||||||| |||||||| |
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| T |
8341414 |
ttgattcgccttgagctcgttctttcctggtttaactcaaattctct |
8341460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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