View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8855_low_13 (Length: 321)
Name: NF8855_low_13
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 42392818 - 42393120
Alignment:
| Q |
1 |
attgagtgctgaatctagattcccttgatcaatattcatatgataggtggtttctagggtagagaagtgtctcatatggtgtatgtcagacaaatacttg |
100 |
Q |
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| T |
42392818 |
attgagcgctgaatctagattcccttgatcaatattcatatgataggtggtttctagggtagagaagtgtctcatatggtgtatgttagacaaatacttg |
42392917 |
T |
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| Q |
101 |
aaaattgttaaaaactccagcaatgataaatggtgctctccgtaagtagaagctcattgaattgctattcttaacaatattgaagttttgaacaattttc |
200 |
Q |
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| T |
42392918 |
aaaattgttaaaaactctagcaatgatcaatggtgctctccgtaagtagaagctcgttgaattgctattcttaacaacattgaagttttgaacaattttc |
42393017 |
T |
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| Q |
201 |
aagcatcaacaatcatagaatacacacgacactttccctccctatcaattaccctatattgtaatatgaagagtgaatatagtacccaaatctatttata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| |
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| T |
42393018 |
aagcatcaacaatcatagaatacacacgacactttccctccctatcaattaccctatatggtaatatgaatagtgaatatagtatccaaatctatttata |
42393117 |
T |
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| Q |
301 |
aag |
303 |
Q |
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||| |
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| T |
42393118 |
aag |
42393120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 303
Target Start/End: Original strand, 42376447 - 42376568
Alignment:
| Q |
179 |
attgaagttttgaacaatttt-caagcatcaacaatcatagaatacacacgacactttccctccctatcaattaccctatattgtaatatgaagagtgaa |
277 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| |||| ||||| | ||||| ||||||||| |||||| |
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| T |
42376447 |
attgaagttttgaacaattttacaagcatcaacaatcgtagaatacacac---actttcccaacctaccaattgct-tatatgataatatgaatagtgaa |
42376542 |
T |
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| Q |
278 |
tatagtacccaaatctatttataaag |
303 |
Q |
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|||| || | | ||||||||||||| |
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| T |
42376543 |
tataatattcgattctatttataaag |
42376568 |
T |
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