View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8855_low_14 (Length: 309)
Name: NF8855_low_14
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_low_14 |
 | |
|
| [»] scaffold0187 (4 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 37855054 - 37855341
Alignment:
| Q |
16 |
atatctgccctgttgtaagagaggcggacacaattgaccgaaccccatagtcaaatatcctatatgtctatgtttt-ttgaatctttttacttttgaatg |
114 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37855054 |
atatctgccctgttgtaagagaggcagacacaattgaccgaaccccatagtcaaatatcctatatgtctatgtttttttgaatctttttacttttgaatg |
37855153 |
T |
|
| Q |
115 |
agagttattgttctaacaaagtttgaaccatgaatattggactcaccccagttgtttgaatcagattccctttgtcttagtttaacaaaaggggtgttta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37855154 |
agagttattgttctaacaaagtttgaaccatgaatattggactcaccccagttgtttgaatcagattccctttgtcttagtttaacaaaaggggtgttta |
37855253 |
T |
|
| Q |
215 |
gtaataattagtactatataaattgagacccccatagcttccaagttgtagcacaacataacacacttccttcattcaagtattatcta |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
37855254 |
gtaataattagtactatataaattgagaccccc-tagcttccaagttgtagcacaacataacacacttccttcattcaattgttatcta |
37855341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 272
Target Start/End: Original strand, 37911335 - 37911455
Alignment:
| Q |
146 |
gaatattggactcaccccagttgtttgaatcagattccctttgtcttagtttaacaaaaggggtgtttagtaataattagtactatataaattgagaccc |
245 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||| ||||||||| |||||||||||| || ||||| |||||||||||||||||||| |||||| |
|
|
| T |
37911335 |
gaatattggagacaccccagtggtttgaatcagatt-cctttgtctaagtttaacaaaaaggttgttt----ataattagtactatataaatatagaccc |
37911429 |
T |
|
| Q |
246 |
ccatagcttccaagttgtagcacaaca |
272 |
Q |
| |
|
|| |||||| ||| ||||||||||||| |
|
|
| T |
37911430 |
cc-tagctttcaatttgtagcacaaca |
37911455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 37881378 - 37881485
Alignment:
| Q |
135 |
gtttgaaccatgaatattggactcaccccagttgtttgaatcagattccctttgtcttagtttaacaaaaggggtgtttagtaataattagtactatata |
234 |
Q |
| |
|
|||| ||||| |||||||| ||||||| || | | |||||||||||||||| |||||||||||||||||| ||||||||| | |||||||||||||||| |
|
|
| T |
37881378 |
gtttaaaccaagaatattgaactcacctcaatgggttgaatcagattccctctgtcttagtttaacaaaa-gggtgtttatgagtaattagtactatata |
37881476 |
T |
|
| Q |
235 |
aattgagac |
243 |
Q |
| |
|
|||| |||| |
|
|
| T |
37881477 |
aattaagac |
37881485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 159 - 279
Target Start/End: Original strand, 37867372 - 37867493
Alignment:
| Q |
159 |
accccagttgtttgaatcagattccctttgtcttagtttaacaaaagggg-tgttta---gtaataattagtactatataaattgagacccccatagctt |
254 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||||| ||||||||| || |||||| ||| ||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
37867372 |
accccaatggtttgaatcagattc--tttgtcttagcttaacaaaaaaggctgtttattagtagtaatttgtactatataaattgagacccc-atagctt |
37867468 |
T |
|
| Q |
255 |
ccaagttgtagcacaacataacaca |
279 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
37867469 |
ccaagttgtagcacaacacaacaca |
37867493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 135 - 303
Target Start/End: Complemental strand, 7058 - 6887
Alignment:
| Q |
135 |
gtttgaaccatgaatattggactcaccccagttgtttgaatcagattccctttgtcttagtttaacaaaaggggtgtt----tagtaataattagtacta |
230 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
7058 |
gtttaaaccatgaatattggactcaccctagtggtttgaatcagattccttttgtcttagtttaacaaaaagggtgtttagttagtaatagttagtacta |
6959 |
T |
|
| Q |
231 |
tataaattgagacccccatagcttccaagttgtagcacaacataacacacttccttcattcaagtattatcta |
303 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
6958 |
tataaactgagaccccc-tagcttccaagttttagcacaacataacacacttccttcattcaattgttatcta |
6887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 135 - 303
Target Start/End: Complemental strand, 17386 - 17215
Alignment:
| Q |
135 |
gtttgaaccatgaatattggactcaccccagttgtttgaatcagattccctttgtcttagtttaacaaaaggggtgtt----tagtaataattagtacta |
230 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
17386 |
gtttaaaccatgaatattggactcaccctagtggtttgaatcagattccttttgtcttagtttaacaaaaagggtgtttagttagtaatagttagtacta |
17287 |
T |
|
| Q |
231 |
tataaattgagacccccatagcttccaagttgtagcacaacataacacacttccttcattcaagtattatcta |
303 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
17286 |
tataaactgagaccccc-tagcttccaagttttagcacaacataacacacttccttcattcaattgttatcta |
17215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 135 - 247
Target Start/End: Complemental strand, 293 - 183
Alignment:
| Q |
135 |
gtttgaaccatgaatattggactcaccccagttgtttgaatcagattccctttgtcttagtttaacaaaaggggtgtttagtaataattagtactatata |
234 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| ||||||||| |||||| ||||||| ||||||||||| |||||||||||| ||||| |||||||||| |
|
|
| T |
293 |
gtttaaaccatgaatattggactcaccctagtggtttgaatccgattcc--ttgtctttgtttaacaaaaagggtgtttagtagtaattggtactatata |
196 |
T |
|
| Q |
235 |
aattgagaccccc |
247 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
195 |
aactgagaccccc |
183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 27742 - 27622
Alignment:
| Q |
146 |
gaatattggactcaccccagttgtttgaatcagattccctttgtcttagtttaacaaaaggggtgtttagtaataattagtactatataaattgagaccc |
245 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||| ||||||||| |||||||||||| || ||||| |||||||||||||||||||| |||||| |
|
|
| T |
27742 |
gaatattggagacaccccagtggtttgaatcagatt-cctttgtctaagtttaacaaaaaggttgttt----ataattagtactatataaatatagaccc |
27648 |
T |
|
| Q |
246 |
ccatagcttccaagttgtagcacaaca |
272 |
Q |
| |
|
|| |||||| ||| ||||||||||||| |
|
|
| T |
27647 |
cc-tagctttcaatttgtagcacaaca |
27622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 9239977 - 9239911
Alignment:
| Q |
212 |
ttagtaataattagtactatataaattgagacccccatagcttccaagttgtagcacaacataacaca |
279 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||||||| |||||| |
|
|
| T |
9239977 |
ttagtagtaatttgtactatataaattgagaccccc-tagcttccaagttgtatcacaacacaacaca |
9239911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University