View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8855_low_15 (Length: 306)
Name: NF8855_low_15
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 132 - 293
Target Start/End: Complemental strand, 52002003 - 52001842
Alignment:
| Q |
132 |
cattgatgatcatcatcagaggaaggaaataccagaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgat |
231 |
Q |
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| T |
52002003 |
cattgatgatcatcatcagaggaaggaaataccagaaaatcaactacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgat |
52001904 |
T |
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| Q |
232 |
gatagcgacaacgatgatgattttgagatttgtaggaacgagtcatttattagaagtcagta |
293 |
Q |
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| T |
52001903 |
gatagcgacaacgatgatgattttgagatttgtaggaacgagtcatttattagaagtcagta |
52001842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 52002085 - 52002002
Alignment:
| Q |
17 |
actccgatgatgcctcttcttctaaacgcacaaaactctacaactttgaaaacacttccgatccaaaaggaaagaaaccactca |
100 |
Q |
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| T |
52002085 |
actccgatgatgcctcttcttctaaacgcacaaaactctacaactttgaaaacacttctgatccaaaaggaaagaaaccactca |
52002002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 52011878 - 52011785
Alignment:
| Q |
146 |
atcagaggaaggaaataccagaaaatcaaatacctttggcttttgatatcaatgcttataatattaacagcgaaactgaaactgatgatagcga |
239 |
Q |
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| T |
52011878 |
atcagaggaaggaaataacagaaaatcaaatatcactggatttggatattaatgactatatcattaccaatgaaactgaaactaatgatagcga |
52011785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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