View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8855_low_16 (Length: 305)
Name: NF8855_low_16
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 150 - 289
Target Start/End: Complemental strand, 52801791 - 52801652
Alignment:
| Q |
150 |
ttctcccaacaacaaagcaaatcgagtccagacaacccaaccaccacactaccgccggccagccgccgcgaccactcacatgtcaccttcttctccatcc |
249 |
Q |
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| T |
52801791 |
ttctcccaacaacaaagcaaatcgagtcaagacaacccaaccaccacaccaccgccggccagccgccgcgaccactcacatgtcaccttcttctccatcc |
52801692 |
T |
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| Q |
250 |
atcacccgccgacgcatcctcctgacctcctccatcttct |
289 |
Q |
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| T |
52801691 |
atcacccgccggcgcatcctcctgacctcctccatcttct |
52801652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 52801831 - 52801798
Alignment:
| Q |
79 |
tcatattcaatctcatttggtcttgctgtttctc |
112 |
Q |
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| T |
52801831 |
tcatattcaatctcatttggtcttgccgtttctc |
52801798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 34213098 - 34213059
Alignment:
| Q |
187 |
caaccaccacactaccgccggccagccgccgcgaccactc |
226 |
Q |
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| T |
34213098 |
caaccaccacaccaccgccggtcagccgccgcgaccactc |
34213059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 12003174 - 12003135
Alignment:
| Q |
187 |
caaccaccacactaccgccggccagccgccgcgaccactc |
226 |
Q |
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| T |
12003174 |
caaccaccacaccaccgccggtcagccgccgcgaccactc |
12003135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 14654782 - 14654743
Alignment:
| Q |
187 |
caaccaccacactaccgccggccagccgccgcgaccactc |
226 |
Q |
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| T |
14654782 |
caaccaccacaccaccgccggtcagccgccgcgaccactc |
14654743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 33754221 - 33754132
Alignment:
| Q |
137 |
acgcgctctcatcttctcccaac-aacaaagcaaatcgagtccagacaacccaaccaccacactaccgccggccagccgccgcgaccactcac |
228 |
Q |
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| T |
33754221 |
acgcgttctcttcttctcccaaccaacaaagccaatcga-tcca--caaggcaaccaccacaccaccgctggccagctgccacgaccactcac |
33754132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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