View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8855_low_17 (Length: 300)
Name: NF8855_low_17
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_low_17 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0400 (1 HSPs) |
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| [»] scaffold0365 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 98 - 300
Target Start/End: Complemental strand, 9334585 - 9334383
Alignment:
| Q |
98 |
tatgatttattaagatttggatcttctcatttagttcttaacagaaacttttgtcactttatacaggggcgagggaaagaaagatgatatgagacacacc |
197 |
Q |
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| T |
9334585 |
tatgatttattaagatttggatattctcatttagttcttaacagaaacttttgtcactttatacaggggcgagggaaagaaagatgatatgagacacacc |
9334486 |
T |
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| Q |
198 |
attgggtttacgcacaaaacttggcgatatggaaatttaatctcttattattatatcctgacagcatgacggtgaaactggcaaaagtgttatatttcca |
297 |
Q |
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| T |
9334485 |
attgggtttacgcacaaaacttggcgatatggaaatttaatctcttattattatatcctgacagcatgacggtgaaactggcaaaattgttatatttcca |
9334386 |
T |
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| Q |
298 |
aga |
300 |
Q |
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||| |
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| T |
9334385 |
aga |
9334383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 9329174 - 9329118
Alignment:
| Q |
112 |
atttggatcttctcatttagttcttaacagaaacttttgtcactttatacaggggcg |
168 |
Q |
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| T |
9329174 |
atttggatcttctcatttagttcttaacagaaacttttgccactttatacaggggcg |
9329118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 9580227 - 9580306
Alignment:
| Q |
124 |
tcatttagttcttaacagaaacttttgtcactttatacaggggcgagggaaagaaagatgatatgagacacaccattggg |
203 |
Q |
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| T |
9580227 |
tcatatagtttttaacagaaacttttgtcactttatacaggagcgacgaaaagaaagaggacgtgagacacgacattggg |
9580306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 451271 - 451398
Alignment:
| Q |
54 |
atagaaaatgaatttatcattttacttttataaattttctctgttatgatttattaagatttggatcttctcatttagttcttaacagaaacttttgtca |
153 |
Q |
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| T |
451271 |
atagaaaatcaatttatcaatttacttttataaattttccatgacattatttattaggatttgaatcttctcatttagttcctgacacaattttttgtct |
451370 |
T |
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| Q |
154 |
ctttatacaggggcgagggaaagaaaga |
181 |
Q |
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| T |
451371 |
ctttatataggacctagagaaagaaaga |
451398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 3680059 - 3680104
Alignment:
| Q |
99 |
atgatttattaagatttggatcttctcatttagttcttaacagaaa |
144 |
Q |
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| T |
3680059 |
atgatttactaagatttggatcttctcatttagttcctaacagaaa |
3680104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 15458 - 15383
Alignment:
| Q |
69 |
atcattttacttttataaattttctctgttatgatttattaagatttggatcttctcatttagttcttaacagaaa |
144 |
Q |
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| T |
15458 |
atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcatttagttcttaacagaaa |
15383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 16101 - 16026
Alignment:
| Q |
69 |
atcattttacttttataaattttctctgttatgatttattaagatttggatcttctcatttagttcttaacagaaa |
144 |
Q |
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|||| |||||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16101 |
atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcatttagttcttaacagaaa |
16026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 14493984 - 14494059
Alignment:
| Q |
69 |
atcattttacttttataaattttctctgttatgatttattaagatttggatcttctcatttagttcttaacagaaa |
144 |
Q |
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|||| |||||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14493984 |
atcaatttacttttataaattttacataaaattatttattaggatttggatcttctcatttagttcttaacagaaa |
14494059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 4432755 - 4432648
Alignment:
| Q |
58 |
aaaatgaatttatcattttacttttataaatttt-ctctgttatgatttattaagatttggatcttctcatttagttcttaacagaaacttttgtcactt |
156 |
Q |
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||||| ||||||||| ||||| ||||||||||| ||| | ||| |||||||| |||||||||||||||||||||||| ||||| || ||||| |||| |
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| T |
4432755 |
aaaatcaatttatcaatttacggttataaattttgctc-gatattatttattaggatttggatcttctcatttagttcctaacaaaatgctttgttactt |
4432657 |
T |
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| Q |
157 |
tatacaggg |
165 |
Q |
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| T |
4432656 |
tttacaggg |
4432648 |
T |
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