View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8855_low_21 (Length: 269)
Name: NF8855_low_21
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 31452288 - 31452539
Alignment:
| Q |
1 |
ctgatttcatttctccaaaatgaatgctagacataattaaggatcaaagctttcagtaacccatcaacggatcccacgattttttcacatcactggtcaa |
100 |
Q |
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| T |
31452288 |
ctgatttcatttctccaaaatgaatgctagacataattaaggatcaaagctttcagtaacccatcaacggatcccacgattttttcacatcactggtcaa |
31452387 |
T |
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| Q |
101 |
agatatgattaatctaaccataacatgtgattccatggaagcctttgagggttactgaaggccttctcctacacaagccatgctatgattttattatgaa |
200 |
Q |
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| T |
31452388 |
agttatgattaatctaaccataacatgtgattccatggaagcctttgagggttactgaaggccttctcctacacaagccatgctatgattttattatga- |
31452486 |
T |
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| Q |
201 |
tatatgaatgcctatttatacacaaagattcaatcaattagagaatattgattt |
254 |
Q |
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| T |
31452487 |
-atatgaatgcctatttatacacaaagattcaatcaattagagaatattgattt |
31452539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 22 - 193
Target Start/End: Original strand, 31428282 - 31428457
Alignment:
| Q |
22 |
gaatgctagacataattaaggatcaaagctttcagtaacccatcaac-ggatcccacgattttttcacatcactg--gtcaaagatatgattaatctaac |
118 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||||| |||||| ||||||||||||| || |
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| T |
31428282 |
gaatgcaagacataattaaggatcaaagctttcagtaacccaccaacaggatcccatgatttt--cacatcactatagtcaaatatatgattaatctgac |
31428379 |
T |
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| Q |
119 |
cataa--catg---tgattccatggaagcctttgagggttactgaaggccttctcctacacaagccatgctatgatttta |
193 |
Q |
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| T |
31428380 |
cgtaagccatgctatgattccatggaagcctttgagggttactgaaggccttctcct--ataagccatgctatgatttta |
31428457 |
T |
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