View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8855_low_26 (Length: 246)
Name: NF8855_low_26
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_low_26 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 11115205 - 11114969
Alignment:
| Q |
1 |
tgtcttgtgaaactttcaaagaatgaagtggcttatttttgtttttctnnnnnnnctttgatgtgctattgtataaagcattcactagaaatctgtttta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11115205 |
tgtcttgtgaaactttcaaagaatgaagtggcttattattgtttttctaaaaaaactttgatgtgctattgtataaagcattcactagaaatctgtttta |
11115106 |
T |
|
| Q |
101 |
tattgttttaaaatgtttaatttagttgacaattgtatgggataactgactcaattgtttcttgtgtaaatttggacagagtttgggttctcaatgatac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
11115105 |
tattgttttaaaatgtttaatttagttgacaattgtatgagataactgactcaattgtttcttgtataaatttggacagaatttgggttctcaatgatac |
11115006 |
T |
|
| Q |
201 |
cgttcaaagatggcagattttgttcttcattccatct |
237 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11115005 |
cgctcaaagatggcagattttgttcttcattccatct |
11114969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 2793422 - 2793473
Alignment:
| Q |
116 |
tttaatttagttgacaattgtatgggataactgactcaattgtttcttgtgt |
167 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
2793422 |
tttaattaagttgacaattgtatgagataactgactaaattgtttctcgtgt |
2793473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 2821030 - 2821083
Alignment:
| Q |
114 |
tgtttaatttagttgacaattgtatgggataactgactcaattgtttcttgtgt |
167 |
Q |
| |
|
||||||||| ||||||||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
2821030 |
tgtttaattaagttgacaattctatgagataactgacttgattgtttcttgtgt |
2821083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 2751564 - 2751618
Alignment:
| Q |
126 |
ttgacaattgtatgggataactgactcaattgtttcttgtgtaaatttggacaga |
180 |
Q |
| |
|
||||||| |||||| |||| |||||||||||||||||||||| || |||||||| |
|
|
| T |
2751564 |
ttgacaactgtatgtgatacctgactcaattgtttcttgtgtgaaggtggacaga |
2751618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 2800215 - 2800249
Alignment:
| Q |
146 |
ctgactcaattgtttcttgtgtaaatttggacaga |
180 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
2800215 |
ctgactcaattgtttcttgtgtcaatttggacaga |
2800249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 3214 - 3170
Alignment:
| Q |
136 |
tatgggataactgactcaattgtttcttgtgtaaatttggacaga |
180 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
3214 |
tatgtgataactgactcaattgtttcttttgtcaatgtggacaga |
3170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University