View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8855_low_3 (Length: 401)
Name: NF8855_low_3
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 383
Target Start/End: Complemental strand, 50958254 - 50957885
Alignment:
| Q |
14 |
gacatcaataggagttcaaaggatctagtatgaataagaacaaaacaacaagcttaaatttgcataaactattgatcatagcatgtttatgtagattaaa |
113 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
50958254 |
gacatcaataggagtttaaaggatctagtatgaataagaacaaaacaacaagcttaaatttgcataaactagtgatcatagcatgtttatgtagattata |
50958155 |
T |
|
| Q |
114 |
ttaaaaatactgttgctggaaattttccctcccccttccattccttctacggttacggcgacgaccccctcttgcagccttcccaaattgatcacacttt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
50958154 |
ttaaaaatactgttgctggaaattttccctcccccttccattccttctacggttacggcgatgaccccctcttgcagccttcccaaattgatcacacttt |
50958055 |
T |
|
| Q |
214 |
gtaaatatcccttggtccttcttattttggtttgttactgtttgcataccgcctctgttatgcctcgatttgttcttcattggtttgaggactgttgcta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50958054 |
gtaaatatcccttggtccttcttattttggtttgttactgtttgcataccgcctctgttatgcctcgatttgttcttcattggtttgaggactgttgcta |
50957955 |
T |
|
| Q |
314 |
gacattgttggattctgcaagctctatagtctttggccagcttggccacttctgcatcagatagtctttt |
383 |
Q |
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| T |
50957954 |
gacattgttggattctgcaagctctgtagtctttggccagcttggccacttctgcatcagatagtctttt |
50957885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 383
Target Start/End: Complemental strand, 15856404 - 15856138
Alignment:
| Q |
108 |
attaaattaaaaatactgttgctggaaattttccctcccccttccattccttctacggttacggcgacgaccccctcttgcagccttcccaaattgatca |
207 |
Q |
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|||| |||||||| |||||||||||| ||| ||||||||||| ||||||||||||||| | | | |||||||| |||| ||||| ||||| |
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| T |
15856404 |
attatattaaaaagactgttgctggagttttcccctcccccttacattccttctacggtaaggac---------ctcttgcaacctttacaaatcgatca |
15856314 |
T |
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| Q |
208 |
cactttgtaaatatcccttggtccttcttattttggtttgttactgtttgcataccgcctctgttatgcctcgatttgttcttcattggtttgaggactg |
307 |
Q |
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|||||||| | ||| ||| |||||||||| |||||||||||||||| | ||| | ||| ||||||||| ||||||||||| ||| |||||||||| |
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| T |
15856313 |
aactttgtagaaatcactttccgcttcttatttcggtttgttactgtttgtacaccccttcttttatgcctcattttgttcttcactggcttgaggactg |
15856214 |
T |
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| Q |
308 |
ttgctagacattgttggattctgcaagctctatagtctttggccagcttggccacttctgcatcagatagtctttt |
383 |
Q |
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| T |
15856213 |
ttgctacacattgttggattatggaagctttatagtctctggccagctgtgccacttctacatcagtgagtctttt |
15856138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 246 - 383
Target Start/End: Complemental strand, 50948792 - 50948655
Alignment:
| Q |
246 |
tgttactgtttgcataccgcctctgttatgcctcgatttgttcttcattggtttgaggactgttgctagacattgttggattctgcaagctctatagtct |
345 |
Q |
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|||||||||||||| || | |||| ||||| || ||||| ||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
50948792 |
tgttactgtttgcacgccccatctgctatgcttcattttgtacttcattggcttgaggactgttgccagacattgttggattttgcaagctctatagtct |
50948693 |
T |
|
| Q |
346 |
ttggccagcttggccacttctgcatcagatagtctttt |
383 |
Q |
| |
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| ||||| |||||||| ||| ||||||| |||||||| |
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| T |
50948692 |
tctgccagattggccacctcttcatcagagagtctttt |
50948655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 15856528 - 15856458
Alignment:
| Q |
14 |
gacatcaataggagttcaaaggatctagtatgaataagaacaaaacaacaagcttaaatttgcataaacta |
84 |
Q |
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||||| |||||||||| ||||||| |||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
15856528 |
gacattaataggagtttgtaggatcttttatgaataagaacaaaacgacaagcttaaagttgcataaacta |
15856458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 218 - 383
Target Start/End: Complemental strand, 33632095 - 33631933
Alignment:
| Q |
218 |
atatcccttggtccttcttattttggtttgttactgtttgcataccgcctctgttatgcctcgatttgttcttcattggtttgaggactgttgctagaca |
317 |
Q |
| |
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|||||||||| ||||| |||| |||||||||||||||||| ||| ||||| ||||||||| ||||| ||||||||| |||||||||||||| ||||| |
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| T |
33632095 |
atatcccttgctccttgttat---ggtttgttactgtttgcacaccccctctactatgcctcgttttgtacttcattggcttgaggactgttgccagaca |
33631999 |
T |
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| Q |
318 |
ttgttggattctgcaagctctatagtctttggccagcttggccacttctgcatcagatagtctttt |
383 |
Q |
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|||||||||| |||||||||||||||||| ||||| |||||||||||| ||||||| |||||||| |
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| T |
33631998 |
ttgttggattttgcaagctctatagtcttctgccagattggccacttcttcatcagagagtctttt |
33631933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 8155381 - 8155334
Alignment:
| Q |
179 |
cccctcttgcagccttcccaaattgatcacactttgtaaatatccctt |
226 |
Q |
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||||||||||||||||| ||||| |||||| ||||||||||||||||| |
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| T |
8155381 |
cccctcttgcagccttcacaaatcgatcactctttgtaaatatccctt |
8155334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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