View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8855_low_34 (Length: 225)
Name: NF8855_low_34
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 56299147 - 56299313
Alignment:
| Q |
15 |
ataattctctgtgtcgatttggtcctatatagacattgaggagtaattaatttattttggcatgattctgagttcataaacatcatagagtcaacttgtt |
114 |
Q |
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| T |
56299147 |
ataattctctgtgtcgatttggtcctatatagacattgaggagtaattaatttattttggcatgactctgagttcataaacatcatagagtcaacttgtt |
56299246 |
T |
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| Q |
115 |
tgtatgtcaatttttagattagacgatagggaatgttaacgagtatttttgaaaaattttaagcatcaaa |
184 |
Q |
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| T |
56299247 |
tgtatgtcaatttttagattagacgatagggaatgttaacgagtatttttgaaaa---ttaagcatcaaa |
56299313 |
T |
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Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 38330920 - 38330807
Alignment:
| Q |
15 |
ataattctctgtgtcgatttggtcctatatagacattgaggagtaattaatttattttggcatgattctgagttcataaacatcatagagtcaacttgtt |
114 |
Q |
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| T |
38330920 |
ataattctctatgtcgatttggtattatatagccattgaggagtgattaatttattttggcatgactctgagttcataaacatcatagagtcaacttgca |
38330821 |
T |
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| Q |
115 |
tgtatgtcaatttt |
128 |
Q |
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| T |
38330820 |
tgtatgtcaatttt |
38330807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 4286376 - 4286497
Alignment:
| Q |
15 |
ataattctctgtgtcgatttggtcctatatagacattgaggagtaattaatttattttggcatgattctgagttcataaacatcatagagtcaacttgtt |
114 |
Q |
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| T |
4286376 |
ataattctctgtgtcgatttggtattatatagccattgaggagtaattaatttattttggcatgagtcggagttcaaaaacatcatagagtcaacttgca |
4286475 |
T |
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| Q |
115 |
tgtatgtcaatttttagattaga |
137 |
Q |
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| T |
4286476 |
tgtatgccaa-ttttagattaga |
4286497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 40220843 - 40220881
Alignment:
| Q |
39 |
ctatatagacattgaggagtaattaatttattttggcat |
77 |
Q |
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| T |
40220843 |
ctatatagccattgaggagtaattaatttattttggcat |
40220881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 40220879 - 40220926
Alignment:
| Q |
89 |
cataaacatcatagagtcaacttgtttgtatgtcaatttttagattaga |
137 |
Q |
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| T |
40220879 |
cataaacatcatagagtcaacttgcatgtatgtcaa-ttttagattaga |
40220926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 48590178 - 48590081
Alignment:
| Q |
39 |
ctatatagacattgaggagtaattaatttattttggcatgattctgagttcataaacatcatagagtcaacttgtttgtatgtcaatttttagattaga |
137 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
48590178 |
ctatatagccattgaggagtaattaatttattttggcatgactttgagttcataaacatcatagagtcaacttgcatgtatgtcaa-ttttagattaga |
48590081 |
T |
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