View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8855_low_4 (Length: 396)
Name: NF8855_low_4
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_low_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 135 - 396
Target Start/End: Original strand, 8830303 - 8830564
Alignment:
| Q |
135 |
gtgtatgtgcgcgcgcgcaatagattataaaacaactatacatccatgaatcatttaatctattctataatattattacttacattacaaccactattgt |
234 |
Q |
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| T |
8830303 |
gtgtgtgtgtgcgcgcgcaatagattataaaacaactacacatccatgaatcatttactctattctataatattattacttacattacaaccactactgt |
8830402 |
T |
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| Q |
235 |
tgtcgctgctgcttcaatcatgcttctgaacatgcaaattgtttgtcaaagtcgagaatatcaatcaaatttttacattaaaaatattgatgacaaatga |
334 |
Q |
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| T |
8830403 |
tgttgctgctgcttcaatcatgcttctgaacatgcaaattgtgtgtcaaagtcgagaatatcaatcaaattttcacattaaaaatattgatgacatatga |
8830502 |
T |
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| Q |
335 |
aagtaaaaatactatcaaaggaaagtctaacctgcgttggcctaaagctttgatggtagcct |
396 |
Q |
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| T |
8830503 |
aagtaaaaatactatcaaagaaaagtctaacctgcgttggcctaaagctttgatggtagcct |
8830564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 8830031 - 8830156
Alignment:
| Q |
1 |
aaattagagtatgaacaaatttaactgtgtacttttcatctagatagtgtatacttttttaaatttagctagtaagttccataaaagaactatattgtga |
100 |
Q |
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| T |
8830031 |
aaattagagtaggaacaaatttagctgtgtacttttcatctagatagtgtatactttcttaaatttagctagtaagttccataaaagaactatactgtga |
8830130 |
T |
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| Q |
101 |
tgtatgattttgtagagttagttatg |
126 |
Q |
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| T |
8830131 |
tgtatgattttgtagagttagttatg |
8830156 |
T |
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