View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8855_low_5 (Length: 392)
Name: NF8855_low_5
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 5 - 382
Target Start/End: Original strand, 45614834 - 45615211
Alignment:
| Q |
5 |
tgggagacttctccaggccaagcttttccgttgggtgtatcacaagtcgacaatgggatcaattttgctatattttcacagcatgcaactgctgtcacac |
104 |
Q |
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| T |
45614834 |
tgggagacttctccaggccaagcttttccgttgggtgtatcacaagtcgacaatgggatcaattttgctatattttcacagcatgcaactgctgtcacac |
45614933 |
T |
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| Q |
105 |
tttgtttgctccttcctgaaaggtaaatttagatattctttttgtatgttagcttaaattatagaagtatatgtttgaagtatttgcggtcatatttgaa |
204 |
Q |
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| T |
45614934 |
tttgtttgctccttcctgaaaggtaaatttagatattctttttgtatgttagcttaaattatagaagtctatgtttgaagtatttgcggtcatatttgaa |
45615033 |
T |
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| Q |
205 |
tttattcacatataagcattttcgtgatgagtctttggtttctaaaaactgttgggaacactttttcatttttgtgtggcagatacaatcatattttccc |
304 |
Q |
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| T |
45615034 |
tttattcacatataagcattttcgtgatgagtctttggtttctaaaaactgttgggaacactttttcatttttgtgtggcagatacaatcatattttccc |
45615133 |
T |
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| Q |
305 |
gcaatatcgaaagtgctcgctagaagcttctaaaaataagatgaaccaaacatgaaactaaccttgtctgtgctcctc |
382 |
Q |
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| T |
45615134 |
gcaatattgaaagtgctcgctagaagcttctaaaaataagatgaaccaaacatgaaactaaccttgtctgtgctcctc |
45615211 |
T |
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