View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8855_low_8 (Length: 376)
Name: NF8855_low_8
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 5323394 - 5323094
Alignment:
| Q |
17 |
tcatcaaagacacgtgactttctttctctttcttccttaatcttatttttcatttttacagtatggtatgtgctgccattgttacacacttgcacaaatc |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5323394 |
tcatcaaagacatgtgactttctttctctttcttccttaatcttatttttcatttttacagtatggtatgtgctgccattgttacacacttgcacaaatc |
5323295 |
T |
|
| Q |
117 |
tggagaattttcttaagctcatgcacaccatttttctattctgttaagaaccgtgttaaccgacccgctcacccgtgacccgtacgaacccaacccgtaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5323294 |
tggagaattttcttaagctcatgcacaccatttttctattctgttaagaaccgtgttacccgacccgctcacccgtgacccgtacgaacccaacccgtaa |
5323195 |
T |
|
| Q |
217 |
aaaccgaatctgaaaattgggcagaaaagggtcacatttcttcacccgcgggttggcttgggtcgagctcttgggcccgaacccgcccgatgcccacccc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5323194 |
aaaccgaatctgaaaattgggcagaaaagggtcacatttcttcacccgcgggttggcttgggtcgagctcttgggcccgaacccgcccgatgcccacccc |
5323095 |
T |
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| Q |
317 |
t |
317 |
Q |
| |
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| |
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| T |
5323094 |
t |
5323094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 51788603 - 51788892
Alignment:
| Q |
17 |
tcatcaaagacacgtgactttctttctctttcttccttaatcttatttttcatttttacagtatggtatgtgctgccattgttacacacttgcacaaatc |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51788603 |
tcatcaaagacatgtgactttctttctctttcttccttaatcttatttttcatttttacagtatggtatgtgctgccattgttacacacttgcacaaatc |
51788702 |
T |
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| Q |
117 |
tggagaattttcttaagctcatgcacaccatttttctattctgttaagaaccgtgttaaccgacccgctcacccgtgacccgtacgaacccaacccgtaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51788703 |
tggagaattttcttaagctcatgcacaccatttttctattctgttaagaaccgtgttacccgacccgctcacccgtgacccgtacgaacccaacccgtaa |
51788802 |
T |
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| Q |
217 |
aaaccgaatctgaaaattgggcagaaaagggtcacatttcttcacccgcgggttggcttgggtcgagctcttgggcccgaacccgcccga |
306 |
Q |
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| T |
51788803 |
aaaccgaatctgaaaattaggcagaaaagggtcacatttcttcacccgcgggttggcttgggtcgagctcttgggcccgaacccgcccga |
51788892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 173 - 317
Target Start/End: Original strand, 13925360 - 13925504
Alignment:
| Q |
173 |
taaccgacccgctcacccgtgacccgtacgaacccaacccgtaaaaaccgaatctgaaaattgggcagaaaagggtcacatttcttcacccgcgggttgg |
272 |
Q |
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|||| |||||||| | |||||||||| ||||||||||||| ||||||||||||||| ||||||||||| || ||||| |||| |||||||| | |||||| |
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| T |
13925360 |
taactgacccgctaaaccgtgacccgcacgaacccaacccttaaaaaccgaatctggaaattgggcagcaatgggtctcattccttcacccactggttgg |
13925459 |
T |
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| Q |
273 |
cttgggtcgagctcttgggcccgaacccgcccgatgcccacccct |
317 |
Q |
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| T |
13925460 |
cttgggtcgagcttttgagcctgaacccgcccgatgcccacccct |
13925504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 319 - 367
Target Start/End: Original strand, 3691190 - 3691238
Alignment:
| Q |
319 |
tctaaatgactagtgcaaaccttggaaataataccgtaataagtataat |
367 |
Q |
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| T |
3691190 |
tctaaatgactagtgcaaaccttggaaataataccgtaataagtataat |
3691238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 165 - 317
Target Start/End: Complemental strand, 20509222 - 20509070
Alignment:
| Q |
165 |
aaccgtgttaaccgacccgctcacccgtgacccgtacgaacccaacccgtaaaaaccgaatctgaaaattgggcagaaaagggtcacatttcttcacccg |
264 |
Q |
| |
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|||||||||||| |||||||| ||| | |||| | |||||||||||| ||||| ||||||| |||||||||| | ||| |||| | ||||||||| |
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| T |
20509222 |
aaccgtgttaacagacccgctaaccggagacctgcacgaacccaacctgtaaacaccgaatttgaaaattggacggaattgggtgtaacatcttcaccca |
20509123 |
T |
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| Q |
265 |
cgggttggcttgggtcgagctcttgggcccgaacccgcccgatgcccacccct |
317 |
Q |
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|||||||||||||||||||| | | ||| |||||||||| ||| |||||||| |
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| T |
20509122 |
tgggttggcttgggtcgagctttcgagcctgaacccgcccaatgtccacccct |
20509070 |
T |
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