View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8855_low_9 (Length: 366)
Name: NF8855_low_9
Description: NF8855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8855_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 47212786 - 47212436
Alignment:
| Q |
1 |
ataccaaacttgaaatagcaaagcattgaaaggaaagcttgtgcaatgacagcagtgaagaggaagttgacacaaactgttacactttgtcctgcagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47212786 |
ataccaaacttgaaatagcaaagcattgaaaggaaagcttgtgcaatgacagcagtgaagaggaagttgacacaaactgttacactttgtcctgcagaac |
47212687 |
T |
|
| Q |
101 |
gagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaatgctgacacaaaaatacaaaccataacaactacaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47212686 |
gagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaatgctgacacaaaaatacaaaccataacaactacaag |
47212587 |
T |
|
| Q |
201 |
agctgcatacccttttgagagttcctcagaatgatccttcactttgattcctagtacaattgctatcaccatttgtgacaagaacatttgaacaccggct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
47212586 |
agctgcatacccttttgagagttcctcagaatgatccttcactttgattcctagtacaattgctatcaccatttgtgacaacaacatttgaacaccagct |
47212487 |
T |
|
| Q |
301 |
tcgagtaatagctttcgacgaccaagtttatccactgaatatattgaaact |
351 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47212486 |
tccagtaatagctttcgacgaccaagtttatccactgaatatattgaaact |
47212436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 47186077 - 47185995
Alignment:
| Q |
82 |
acactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaa |
164 |
Q |
| |
|
||||||||||| || || | |||||| | |||||| ||||||| ||||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
47186077 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
47185995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 47198616 - 47198534
Alignment:
| Q |
82 |
acactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaa |
164 |
Q |
| |
|
||||||||||| || || | |||||| | |||||| ||||||| ||||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
47198616 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
47198534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 66 - 332
Target Start/End: Original strand, 748570 - 748836
Alignment:
| Q |
66 |
gttgacacaaactgttacactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaat |
165 |
Q |
| |
|
||||||||||||||| ||||||||||| || || |||||||| ||||||||| |||||||||||||||||||| | || |||||||| ||||| ||||| |
|
|
| T |
748570 |
gttgacacaaactgtgacactttgtccagctgatcgagtctcgagtggaaatgtctcacttggaataagccaaccgagaggaccccaagaccaagcaaag |
748669 |
T |
|
| Q |
166 |
gctgacacaaaaatacaaaccataacaactacaagagctgcatacccttttgagagttcctcagaatgatccttcactttgattcctagtacaattgcta |
265 |
Q |
| |
|
|| ||||| ||| | || |||| | ||| |||| |||||| |||||||| || || ||||||||||| |||| ||||| || || | ||||||| |
|
|
| T |
748670 |
gcagacacgaaagtgcataccaagataacaacaaatattgcatagccttttgaaagatcgtcagaatgatcagtcaccttgatcccaagaatgattgcta |
748769 |
T |
|
| Q |
266 |
tcaccatttgtgacaagaacatttgaacaccggcttcgagtaatagctttcgacgaccaagtttatc |
332 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||| | | || | | ||||||||||||||||| |
|
|
| T |
748770 |
tcacaatttgagacaagaacatttgtacaccggcttccaacagtaacatacgacgaccaagtttatc |
748836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 41414021 - 41414096
Alignment:
| Q |
84 |
actttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccat |
159 |
Q |
| |
|
|||||| ||||| ||||| | |||| ||||||||||||||||||||| |||| |||| ||||||||||||||| |
|
|
| T |
41414021 |
actttgccctgctgaacggatttctaatggaaatatctcacttggaattgtccaaccaagaggaccccatgaccat |
41414096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 36202786 - 36202701
Alignment:
| Q |
80 |
ttacactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaat |
165 |
Q |
| |
|
|||||||||| ||||||||||| |||| | ||| || |||||||| |||| | |||| |||| |||||||||||||| |||||| |
|
|
| T |
36202786 |
ttacactttgagctgcagaacgaatctccaatgggaaaatctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaat |
36202701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University