View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8856_high_3 (Length: 256)

Name: NF8856_high_3
Description: NF8856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8856_high_3
NF8856_high_3
[»] chr8 (22 HSPs)
chr8 (85-256)||(42791950-42792122)
chr8 (13-86)||(9241562-9241635)
chr8 (13-84)||(10678169-10678240)
chr8 (13-54)||(11582808-11582849)
chr8 (13-54)||(26125677-26125718)
chr8 (13-54)||(36743500-36743541)
chr8 (16-54)||(30660762-30660800)
chr8 (13-54)||(29800967-29801008)
chr8 (13-54)||(45397358-45397399)
chr8 (13-53)||(42197452-42197492)
chr8 (13-54)||(29705404-29705445)
chr8 (13-54)||(31384706-31384747)
chr8 (13-46)||(42295245-42295278)
chr8 (45-84)||(19386631-19386670)
chr8 (45-84)||(35181516-35181555)
chr8 (13-43)||(5754956-5754986)
chr8 (13-43)||(20148813-20148843)
chr8 (14-51)||(2165981-2166018)
chr8 (13-46)||(2547046-2547079)
chr8 (13-46)||(30912579-30912612)
chr8 (13-54)||(42699299-42699340)
chr8 (49-85)||(28977145-28977181)
[»] chr2 (21 HSPs)
chr2 (13-85)||(42849875-42849947)
chr2 (13-54)||(19047199-19047240)
chr2 (13-54)||(1750456-1750497)
chr2 (13-54)||(12302270-12302311)
chr2 (13-54)||(30838674-30838715)
chr2 (14-54)||(43490419-43490459)
chr2 (17-54)||(33229344-33229381)
chr2 (13-46)||(43335780-43335813)
chr2 (45-84)||(966895-966934)
chr2 (45-84)||(16803968-16804007)
chr2 (45-84)||(16843250-16843289)
chr2 (45-84)||(18491705-18491744)
chr2 (45-84)||(43114557-43114596)
chr2 (13-55)||(16096788-16096830)
chr2 (13-54)||(4451967-4452008)
chr2 (45-82)||(11825715-11825752)
chr2 (48-85)||(16096746-16096783)
chr2 (17-54)||(39149313-39149350)
chr2 (45-82)||(41282035-41282072)
chr2 (49-85)||(12415525-12415561)
chr2 (49-85)||(12427585-12427621)
[»] chr3 (21 HSPs)
chr3 (13-85)||(52629839-52629911)
chr3 (13-54)||(24688419-24688460)
chr3 (13-54)||(42394436-42394477)
chr3 (13-54)||(54237138-54237179)
chr3 (13-85)||(36150129-36150213)
chr3 (13-55)||(27748604-27748646)
chr3 (13-54)||(40480791-40480832)
chr3 (13-54)||(40808907-40808948)
chr3 (13-54)||(42100730-42100771)
chr3 (13-54)||(45126945-45126986)
chr3 (13-54)||(46941095-46941136)
chr3 (13-54)||(25413723-25413764)
chr3 (13-46)||(53273701-53273734)
chr3 (13-54)||(53581875-53581916)
chr3 (13-54)||(54246165-54246206)
chr3 (13-84)||(19148793-19148862)
chr3 (45-84)||(4190326-4190365)
chr3 (13-54)||(4190282-4190323)
chr3 (48-84)||(25413681-25413717)
chr3 (49-85)||(34791828-34791864)
chr3 (48-84)||(54246212-54246248)
[»] chr1 (16 HSPs)
chr1 (13-85)||(4888054-4888126)
chr1 (13-54)||(5489818-5489859)
chr1 (13-54)||(43571103-43571144)
chr1 (13-54)||(4401370-4401411)
chr1 (45-86)||(35003292-35003333)
chr1 (13-46)||(48498979-48499012)
chr1 (45-85)||(48119627-48119667)
chr1 (45-84)||(14427347-14427386)
chr1 (45-84)||(44112677-44112716)
chr1 (45-84)||(45427806-45427845)
chr1 (13-51)||(23989540-23989578)
chr1 (20-54)||(24769523-24769557)
chr1 (16-54)||(50448280-50448318)
chr1 (13-54)||(2497579-2497620)
chr1 (47-84)||(41065153-41065190)
chr1 (49-85)||(38335917-38335953)
[»] chr4 (26 HSPs)
chr4 (13-85)||(36004133-36004205)
chr4 (13-54)||(25051735-25051776)
chr4 (16-86)||(51512285-51512355)
chr4 (13-54)||(27864606-27864647)
chr4 (13-54)||(33703183-33703224)
chr4 (13-54)||(43949818-43949859)
chr4 (13-54)||(23036022-23036063)
chr4 (14-55)||(27316731-27316772)
chr4 (13-54)||(27893859-27893900)
chr4 (13-46)||(39631151-39631184)
chr4 (13-46)||(48463467-48463500)
chr4 (13-46)||(55966363-55966396)
chr4 (45-84)||(711960-711999)
chr4 (49-84)||(28988473-28988508)
chr4 (16-46)||(27550359-27550389)
chr4 (13-43)||(28982839-28982869)
chr4 (13-43)||(31680955-31680985)
chr4 (13-54)||(712002-712043)
chr4 (13-54)||(1771283-1771324)
chr4 (45-82)||(3756307-3756344)
chr4 (13-54)||(23204795-23204836)
chr4 (13-54)||(35017775-35017815)
chr4 (13-54)||(41878448-41878489)
chr4 (13-46)||(43514703-43514736)
chr4 (48-84)||(1771330-1771366)
chr4 (45-85)||(17619213-17619253)
[»] chr6 (14 HSPs)
chr6 (13-55)||(7292788-7292830)
chr6 (13-54)||(9698350-9698391)
chr6 (13-54)||(13743238-13743279)
chr6 (13-54)||(13748738-13748779)
chr6 (13-54)||(7273352-7273393)
chr6 (13-46)||(7367599-7367632)
chr6 (13-46)||(24204004-24204037)
chr6 (13-46)||(26670026-26670059)
chr6 (45-87)||(27441539-27441581)
chr6 (13-55)||(30014384-30014426)
chr6 (13-46)||(21279979-21280012)
chr6 (13-46)||(26466849-26466882)
chr6 (13-54)||(27441584-27441625)
chr6 (13-46)||(30736032-30736065)
[»] chr5 (10 HSPs)
chr5 (13-55)||(41334680-41334722)
chr5 (13-54)||(2614666-2614707)
chr5 (13-55)||(7617174-7617216)
chr5 (13-54)||(18034024-18034065)
chr5 (13-54)||(5257037-5257078)
chr5 (13-46)||(22512355-22512388)
chr5 (49-84)||(41334728-41334763)
chr5 (49-86)||(32473459-32473496)
chr5 (13-46)||(33801519-33801552)
chr5 (48-84)||(33855107-33855143)
[»] scaffold0038 (1 HSPs)
scaffold0038 (13-54)||(112697-112738)
[»] chr7 (20 HSPs)
chr7 (13-54)||(24001029-24001070)
chr7 (13-54)||(42538448-42538489)
chr7 (13-46)||(5015445-5015478)
chr7 (13-54)||(5810941-5810982)
chr7 (13-54)||(27393277-27393318)
chr7 (13-46)||(35069771-35069804)
chr7 (13-46)||(42972902-42972935)
chr7 (13-54)||(43343641-43343682)
chr7 (13-54)||(44416951-44416992)
chr7 (13-54)||(45326062-45326103)
chr7 (48-84)||(41861674-41861710)
chr7 (45-84)||(24280657-24280696)
chr7 (16-46)||(26898422-26898452)
chr7 (16-54)||(32029837-32029875)
chr7 (13-43)||(44326231-44326261)
chr7 (13-54)||(4638216-4638257)
chr7 (13-54)||(10573791-10573832)
chr7 (45-86)||(31513285-31513326)
chr7 (13-54)||(38160596-38160637)
chr7 (49-89)||(43317438-43317478)
[»] scaffold0385 (1 HSPs)
scaffold0385 (13-54)||(11293-11334)
[»] scaffold0187 (2 HSPs)
scaffold0187 (13-54)||(14205-14246)
scaffold0187 (13-54)||(24533-24574)
[»] scaffold0119 (1 HSPs)
scaffold0119 (13-46)||(735-768)
[»] scaffold0003 (2 HSPs)
scaffold0003 (45-87)||(45780-45822)
scaffold0003 (13-54)||(45736-45777)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 85 - 256
Target Start/End: Complemental strand, 42792122 - 42791950
Alignment:
Q  85 aatttaatttgctgcatatattattgcctggttttgtttggataaaagtaaatataaactgaaatgttgtgcttgtgctccgtgcggtagacaannnnnn 184  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  42792122 aatttaatttgctgtatatattattgcctggtcttgtttggataaaagtaaatataaactgaaatgttgtgcttgtgctccgtgcggtagacaatttttt 42792023  T
Q  185 nctnnnnnnncacataatacaac-annnnnnnnacgctaatactttatacaacttgatgactaattttataaa 256  Q
     ||       |||||||||||||          ||||||||||||||||||||||||||||||||||||||||    
T  42792022 tctaaaaaaacacataatacaacttttttttttacgctaatactttatacaacttgatgactaattttataaa 42791950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 9241635 - 9241562
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgtatgaataaagggtattcatgtaacattttccaa 86  Q
    ||||||||||||||| ||||||||||||||| |||||||||| |||||||||   |||||||||||||||||||    
T  9241635 gtgagatgaacttacaaaaatatccctaatatatagggtgtaggaataaaggaggttcatgtaacattttccaa 9241562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 10678169 - 10678240
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    |||||||||| |||||||||| ||| ||||| || |||||||||| ||||||||||||||||||||||||||    
T  10678169 gtgagatgaatttaccaaaatgtccttaatatatggggtgtatgattaaagggtattcatgtaacattttcc 10678240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 11582849 - 11582808
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11582849 gtgagatgaacttaccaaaatatccctaatacatagggtgta 11582808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 26125718 - 26125677
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26125718 gtgagatgaacttaccaaaatatccctaatacatagggtgta 26125677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 36743500 - 36743541
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36743500 gtgagatgaacttaccaaaatatccctaatacatagggtgta 36743541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 30660762 - 30660800
Alignment:
Q  16 agatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30660762 agatgaacttaccaaaatatccctaatacatagggtgta 30660800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 29800967 - 29801008
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  29800967 gtgagatgaacttaccaaaatatccctaatacatggggtgta 29801008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 45397399 - 45397358
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  45397399 gtgagatgaacttacaaaaatatccctaatacatagggtgta 45397358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 42197452 - 42197492
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgt 53  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  42197452 gtgagatgaacttaccaaaatatccctaatacatagtgtgt 42197492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 29705445 - 29705404
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||| ||||||||||||||||||| |||||||    
T  29705445 gtgagatgaacttatcaaaatatccctaatacatggggtgta 29705404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 31384747 - 31384706
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||| |||||||||| |||||||    
T  31384747 gtgagatgaacttaccaaaatattcctaatacatggggtgta 31384706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 42295278 - 42295245
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  42295278 gtgagatgaacttaccaaaatatccctaatacat 42295245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 19386631 - 19386670
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  19386631 atagggtgtatgattaaagggtgttcatgtaacattttcc 19386670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 35181555 - 35181516
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  35181555 atagggtgtatgattaaagggtgttcatgtaacattttcc 35181516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 5754986 - 5754956
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaata 43  Q
    |||||||||||||||||||||||||||||||    
T  5754986 gtgagatgaacttaccaaaatatccctaata 5754956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 20148843 - 20148813
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaata 43  Q
    |||||||||||||||||||||||||||||||    
T  20148843 gtgagatgaacttaccaaaatatccctaata 20148813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 2165981 - 2166018
Alignment:
Q  14 tgagatgaacttaccaaaatatccctaatacatagggt 51  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  2165981 tgagatgaacttaccaaaatatctctaatacatggggt 2166018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 2547079 - 2547046
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||| ||||||||||||||||||    
T  2547079 gtgagatgaacttactaaaatatccctaatacat 2547046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 30912579 - 30912612
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    |||||||||||||||||||||| |||||||||||    
T  30912579 gtgagatgaacttaccaaaatacccctaatacat 30912612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 42699340 - 42699299
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||| ||||||||| ||||||||| ||||||    
T  42699340 gtgagatgaacttacaaaaatatccataatacataaggtgta 42699299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 28977181 - 28977145
Alignment:
Q  49 ggtgtatgaataaagggtattcatgtaacattttcca 85  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  28977181 ggtgtaggaataaagggtgttcatgtaacattttcca 28977145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 42849875 - 42849947
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgtatgaataaagggtattcatgtaacattttcca 85  Q
    |||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  42849875 gtgagatgaacttatcaaaatatccctaatacatggggtgtaggaataaagggtgttcatgtaacattttcca 42849947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 19047240 - 19047199
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19047240 gtgagatgaacttaccaaaatatccctaatacatagggtgta 19047199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 1750497 - 1750456
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  1750497 gtgagatgaacttacaaaaatatccctaatacatagggtgta 1750456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 12302270 - 12302311
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  12302270 gtgagatgaacttacaaaaatatccctaatacatagggtgta 12302311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 30838715 - 30838674
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  30838715 gtgagatgaacttaccaaaatatccctaatacatggggtgta 30838674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 43490419 - 43490459
Alignment:
Q  14 tgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  43490419 tgagatgaacttaccaaaatatccctaatacatagagtgta 43490459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 33229381 - 33229344
Alignment:
Q  17 gatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||||||||||||| |||||||    
T  33229381 gatgaacttaccaaaatatccctaatacatggggtgta 33229344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 43335780 - 43335813
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  43335780 gtgagatgaacttaccaaaatatccctaatacat 43335813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 966895 - 966934
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  966895 atagggtgtatgattaaagggtgttcatgtaacattttcc 966934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 16804007 - 16803968
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  16804007 atagggtgtatgattaaagggtgttcatgtaacattttcc 16803968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 16843289 - 16843250
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  16843289 atagggtgtatgattaaagggtgttcatgtaacattttcc 16843250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 18491744 - 18491705
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  18491744 atagggtgtatgattaaagggtgttcatgtaacattttcc 18491705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 43114596 - 43114557
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  43114596 atagggtgtatgattaaagggtgttcatgtaacattttcc 43114557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 16096830 - 16096788
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgtat 55  Q
    ||||||| |||| ||||||||||||||||||||| ||||||||    
T  16096830 gtgagattaactcaccaaaatatccctaatacatggggtgtat 16096788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 4451967 - 4452008
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||| ||||||||||||||||||| |||| ||||||    
T  4451967 gtgagatgaatttaccaaaatatccctaatgcatatggtgta 4452008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 11825715 - 11825752
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacatttt 82  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  11825715 atagggtgtatgattaaagggtgttcatgtaacatttt 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 16096783 - 16096746
Alignment:
Q  48 gggtgtatgaataaagggtattcatgtaacattttcca 85  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  16096783 gggtgtaggaataaagggtgttcatgtaacattttcca 16096746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 39149313 - 39149350
Alignment:
Q  17 gatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  39149313 gatgaacttaccaaaatatctctaatacataggatgta 39149350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 41282035 - 41282072
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacatttt 82  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  41282035 atagggtgtatgattaaagggtgttcatgtaacatttt 41282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 12415525 - 12415561
Alignment:
Q  49 ggtgtatgaataaagggtattcatgtaacattttcca 85  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  12415525 ggtgtatgattaaagggtgttcatgtaacattttcca 12415561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 12427585 - 12427621
Alignment:
Q  49 ggtgtatgaataaagggtattcatgtaacattttcca 85  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  12427585 ggtgtatgattaaagggtgttcatgtaacattttcca 12427621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 52629911 - 52629839
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgtatgaataaagggtattcatgtaacattttcca 85  Q
    ||||||||||||||| ||||||||| |||||||||||||||| ||||||| ||| ||||||||| ||||||||    
T  52629911 gtgagatgaacttacaaaaatatccttaatacatagggtgtaggaataaaaggtgttcatgtaatattttcca 52629839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 24688419 - 24688460
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24688419 gtgagatgaacttaccaaaatatccctaatacatagggtgta 24688460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 42394436 - 42394477
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42394436 gtgagatgaacttaccaaaatatccctaatacatagggtgta 42394477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 54237179 - 54237138
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  54237179 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54237138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 36150213 - 36150129
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggt------------gtatgaataaagggtattcatgtaacattttcca 85  Q
    ||||||||||||||||||||||||||| |||||||||||            ||||||||||||||||||||||||||||||||||    
T  36150213 gtgagatgaacttaccaaaatatccctgatacatagggtgtataatggggtgtatgaataaagggtattcatgtaacattttcca 36150129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 27748646 - 27748604
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgtat 55  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  27748646 gtgagatgaacttaccaaaatatccctaatacataaggtgtat 27748604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 40480832 - 40480791
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  40480832 gtgagatgaacttaccaaaatatccctaatacataggatgta 40480791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 40808948 - 40808907
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  40808948 gtgagatgaacttaccaaaatatccctaatacatggggtgta 40808907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 42100771 - 42100730
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  42100771 gtgagatgaacttaccaaaatatccctaatacatggggtgta 42100730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 45126945 - 45126986
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  45126945 gtgagatgaacttaccaaaatatccctaatacatggggtgta 45126986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 46941136 - 46941095
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  46941136 gtgagatgaacttaccaaaatatccctaatacatggggtgta 46941095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 25413764 - 25413723
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  25413764 gtgagatgaacttacaaaaatatccctaatacataaggtgta 25413723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 53273701 - 53273734
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  53273701 gtgagatgaacttaccaaaatatccctaatacat 53273734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 53581875 - 53581916
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  53581875 gtgagatgaacttatcaaaatatccctaatacataggatgta 53581916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 54246165 - 54246206
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  54246165 gtgagatgaacttacaaaaatatctctaatacatagggtgta 54246206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 19148862 - 19148793
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||| || |||| ||||| ||||||||||||||||||| ||||||||| |  ||||| |||||||||||    
T  19148862 gtgagataaatttactaaaatgtccctaatacatagggtgtgtgaataaagag--ttcatataacattttcc 19148793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 4190326 - 4190365
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  4190326 atagggtgtatgattaaagggtgttcatgtaacattttcc 4190365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 4190282 - 4190323
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||| ||||||||||||| |||||||||| ||||||    
T  4190282 gtgagatgaatttaccaaaatatctctaatacataaggtgta 4190323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 25413717 - 25413681
Alignment:
Q  48 gggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  25413717 gggtgtaggaataaagggtgttcatgtaacattttcc 25413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 34791864 - 34791828
Alignment:
Q  49 ggtgtatgaataaagggtattcatgtaacattttcca 85  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  34791864 ggtgtatgattaaagggtgttcatgtaacattttcca 34791828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 54246212 - 54246248
Alignment:
Q  48 gggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  54246212 gggtgtaggaataaagggtgttcatgtaacattttcc 54246248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 4888126 - 4888054
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgtatgaataaagggtattcatgtaacattttcca 85  Q
    ||||||| |||||||||||||||||||||||||| || |||| ||||||||||  ||||||||||||||||||    
T  4888126 gtgagataaacttaccaaaatatccctaatacatgggatgtaggaataaagggcgttcatgtaacattttcca 4888054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 5489859 - 5489818
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5489859 gtgagatgaacttaccaaaatatccctaatacatagggtgta 5489818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 43571103 - 43571144
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  43571103 gtgagatgaacttaccaaaatatccctaatacatggggtgta 43571144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 4401411 - 4401370
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  4401411 gtgagatgaacttaccaaaatatctctaatacatggggtgta 4401370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 35003333 - 35003292
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttccaa 86  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  35003333 atagggtgtatgattaaagggtgttcatgtaacattttccaa 35003292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 48498979 - 48499012
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  48498979 gtgagatgaacttaccaaaatatccctaatacat 48499012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 48119667 - 48119627
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttcca 85  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  48119667 atagggtgtatgattaaagggtgttcatgtaacattttcca 48119627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 14427386 - 14427347
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  14427386 atagggtgtatgattaaagggtgttcatgtaacattttcc 14427347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 44112716 - 44112677
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  44112716 atagggtgtatgattaaagggtgttcatgtaacattttcc 44112677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 45427806 - 45427845
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  45427806 atagggtgtatgattaaaaggtattcatgtaacattttcc 45427845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 23989540 - 23989578
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggt 51  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  23989540 gtgagataaatttaccaaaatatccctaatacatagggt 23989578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 24769523 - 24769557
Alignment:
Q  20 gaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||| |||||||    
T  24769523 gaacttaccaaaatatccctaatacatggggtgta 24769557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 50448280 - 50448318
Alignment:
Q  16 agatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  50448280 agatgaacttacaaaaatatccctaatacataaggtgta 50448318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 2497579 - 2497620
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||| ||||| || |||||||    
T  2497579 gtgagatgaacttaccaaaatatccttaatatatggggtgta 2497620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 41065190 - 41065153
Alignment:
Q  47 agggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  41065190 agggtgtatgattaaagggtgttcatgtaacattttcc 41065153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 38335953 - 38335917
Alignment:
Q  49 ggtgtatgaataaagggtattcatgtaacattttcca 85  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  38335953 ggtgtatgattaaagggtgttcatgtaacattttcca 38335917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 36004133 - 36004205
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgtatgaataaagggtattcatgtaacattttcca 85  Q
    ||||||| || ||| |||||| ||||||||| || |||||||||| |||||||||||||||||||||||||||    
T  36004133 gtgagataaatttatcaaaatgtccctaatatatggggtgtatgattaaagggtattcatgtaacattttcca 36004205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 25051776 - 25051735
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25051776 gtgagatgaacttaccaaaatatccctaatacatagggtgta 25051735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 51512285 - 51512355
Alignment:
Q  16 agatgaacttaccaaaatatccctaatacatagggtgtatgaataaagggtattcatgtaacattttccaa 86  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||| |   |||||||||||    
T  51512285 agatgaacttaccaaaatatctctaatacatggggtgtaggaataaagggtgttcttcatacattttccaa 51512355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 27864647 - 27864606
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  27864647 gtgagatgaacttaccaaaatatccctaatacatggggtgta 27864606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 33703224 - 33703183
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  33703224 gtgagatgaacttaccaaaatatccctaatacatggggtgta 33703183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 43949818 - 43949859
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  43949818 gtgagatgaacttaccaaaatatccctaatacatggggtgta 43949859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 23036063 - 23036022
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  23036063 gtgagatgaacttacaaaaatatccctaatatatagggtgta 23036022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 27316731 - 27316772
Alignment:
Q  14 tgagatgaacttaccaaaatatccctaatacatagggtgtat 55  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  27316731 tgagatgaacttaccaaaatatccttaatacatggggtgtat 27316772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 27893859 - 27893900
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||| ||||||||||||||||||||||| |||||||    
T  27893859 gtgagatgaaattaccaaaatatccctaatacatggggtgta 27893900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 39631184 - 39631151
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  39631184 gtgagatgaacttaccaaaatatccctaatacat 39631151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 48463467 - 48463500
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  48463467 gtgagatgaacttaccaaaatatccctaatacat 48463500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 55966363 - 55966396
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  55966363 gtgagatgaacttaccaaaatatccctaatacat 55966396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 711999 - 711960
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  711999 atagggtgtatgattaaagggtgttcatgtaacattttcc 711960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 28988508 - 28988473
Alignment:
Q  49 ggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    |||||||||||||||||| |||||||||||||||||    
T  28988508 ggtgtatgaataaagggtgttcatgtaacattttcc 28988473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 27550389 - 27550359
Alignment:
Q  16 agatgaacttaccaaaatatccctaatacat 46  Q
    |||||||||||||||||||||||||||||||    
T  27550389 agatgaacttaccaaaatatccctaatacat 27550359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 28982839 - 28982869
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaata 43  Q
    |||||||||||||||||||||||||||||||    
T  28982839 gtgagatgaacttaccaaaatatccctaata 28982869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 31680985 - 31680955
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaata 43  Q
    |||||||||||||||||||||||||||||||    
T  31680985 gtgagatgaacttaccaaaatatccctaata 31680955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 712043 - 712002
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||| |||||||||||||| |||| |||||||||||    
T  712043 gtgagatgaatttaccaaaatatccttaatgcatagggtgta 712002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 1771283 - 1771324
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||| ||||||||| ||||||||| |||||||    
T  1771283 gtgagatgaacttatcaaaatatctctaatacatggggtgta 1771324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 3756307 - 3756344
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacatttt 82  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  3756307 atagggtgtatgattaaagggtgttcatgtaacatttt 3756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 23204795 - 23204836
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||| |||||||||| ||||||||||||||||||||| ||||    
T  23204795 gtgacatgaacttacaaaaatatccctaatacataggatgta 23204836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 35017815 - 35017775
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||| |||||| |||||||    
T  35017815 gtgagatgaacttaccaaaatatccct-atacatggggtgta 35017775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 41878489 - 41878448
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||| |||||||||||||||  ||||||||||    
T  41878489 gtgagatgaacttatcaaaatatccctaatggatagggtgta 41878448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 43514703 - 43514736
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    |||||||||||||||||||||| |||||||||||    
T  43514703 gtgagatgaacttaccaaaataaccctaatacat 43514736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 1771330 - 1771366
Alignment:
Q  48 gggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  1771330 gggtgtaggaataaagggtgttcatgtaacattttcc 1771366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 17619213 - 17619253
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttcca 85  Q
    ||||||||||||| |||| ||| ||||||||||||||||||    
T  17619213 atagggtgtatgattaaaaggtgttcatgtaacattttcca 17619253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 7292830 - 7292788
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgtat 55  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7292830 gtgagatgaacttaccaaaatatccctaatacatagggtgtat 7292788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 9698350 - 9698391
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9698350 gtgagatgaacttaccaaaatatccctaatacatagggtgta 9698391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 13743238 - 13743279
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  13743238 gtgagatgaacttaccaaaatatccctaatacatggggtgta 13743279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 13748738 - 13748779
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  13748738 gtgagatgaacttaccaaaatatccctaatacatggggtgta 13748779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 7273352 - 7273393
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  7273352 gtgagatgaacttaccaaaatatctctaatacatggggtgta 7273393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 7367632 - 7367599
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  7367632 gtgagatgaacttaccaaaatatccctaatacat 7367599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 24204004 - 24204037
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  24204004 gtgagatgaacttaccaaaatatccctaatacat 24204037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 26670026 - 26670059
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  26670026 gtgagatgaacttaccaaaatatccctaatacat 26670059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 27441581 - 27441539
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttccaat 87  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||    
T  27441581 atagggtgtatgattaaagggtgttcatgtaacatttttcaat 27441539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 30014426 - 30014384
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgtat 55  Q
    ||||||||||||||||||||||| |||||||||| || |||||    
T  30014426 gtgagatgaacttaccaaaatatgcctaatacatgggatgtat 30014384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 21280012 - 21279979
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    |||||||||| |||||||||||||||||||||||    
T  21280012 gtgagatgaatttaccaaaatatccctaatacat 21279979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 26466882 - 26466849
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    |||||||||||||||||||||| |||||||||||    
T  26466882 gtgagatgaacttaccaaaataaccctaatacat 26466849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 27441625 - 27441584
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||| |||||||||||||| ||||||||||| ||||    
T  27441625 gtgagatgaatttaccaaaatatccttaatacataggatgta 27441584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 30736065 - 30736032
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    |||||||||||||||||||||||| |||||||||    
T  30736065 gtgagatgaacttaccaaaatatcactaatacat 30736032  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 41334680 - 41334722
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgtat 55  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  41334680 gtgagatgaacttaccaaaatatccctaatacatagggtgtat 41334722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 2614666 - 2614707
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2614666 gtgagatgaacttaccaaaatatccctaatacatagggtgta 2614707  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 7617216 - 7617174
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgtat 55  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  7617216 gtgagatgaacttaccaaaatatccctaatacatggggtgtat 7617174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 18034065 - 18034024
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  18034065 gtgagatgaacttacaaaaatatccctaatacatagggtgta 18034024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 5257078 - 5257037
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||| ||||||||||||||||||||||| |||||||    
T  5257078 gtgagatgaaattaccaaaatatccctaatacatggggtgta 5257037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 22512388 - 22512355
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  22512388 gtgagatgaacttaccaaaatatccctaatacat 22512355  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 41334728 - 41334763
Alignment:
Q  49 ggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    |||||||||||||||||| |||||||||||||||||    
T  41334728 ggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 32473459 - 32473496
Alignment:
Q  49 ggtgtatgaataaagggtattcatgtaacattttccaa 86  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  32473459 ggtgtatgattaaagggtgttcatgtaacattttccaa 32473496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 33801552 - 33801519
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||| ||||||||||||||||||    
T  33801552 gtgagatgaacttactaaaatatccctaatacat 33801519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 33855107 - 33855143
Alignment:
Q  48 gggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  33855107 gggtgtaggaataaagggtgttcatgtaacattttcc 33855143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 112738 - 112697
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  112738 gtgagatgaacttaccaaaatatccctaatacatagggtgta 112697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 24001029 - 24001070
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24001029 gtgagatgaacttaccaaaatatccctaatacatagggtgta 24001070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 42538448 - 42538489
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42538448 gtgagatgaacttaccaaaatatccctaatacatagggtgta 42538489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 5015478 - 5015445
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  5015478 gtgagatgaacttaccaaaatatccctaatacat 5015445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 5810941 - 5810982
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||| |||||||||||||||| ||||||||||    
T  5810941 gtgagatgaacttatcaaaatatccctaatatatagggtgta 5810982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 27393277 - 27393318
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  27393277 gtgagatgaacttacaaaaatatccctaatacatagagtgta 27393318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 35069804 - 35069771
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  35069804 gtgagatgaacttaccaaaatatccctaatacat 35069771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 42972935 - 42972902
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  42972935 gtgagatgaacttaccaaaatatccctaatacat 42972902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 43343641 - 43343682
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||| ||||||||||||||||||| |||||||    
T  43343641 gtgagatgaacttatcaaaatatccctaatacatggggtgta 43343682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 44416951 - 44416992
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||||||| ||||||||||||||||||| |||||||    
T  44416951 gtgagatgaacttatcaaaatatccctaatacatggggtgta 44416992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 45326103 - 45326062
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||| || |||||||    
T  45326103 gtgagatgaacttaccaaaatatccctaatatatggggtgta 45326062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 41861710 - 41861674
Alignment:
Q  48 gggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    ||||||||||||||||||| |||||||||||||||||    
T  41861710 gggtgtatgaataaagggtgttcatgtaacattttcc 41861674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 24280657 - 24280696
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttcc 84  Q
    |||||||||||||||||||||| |||| ||||||||||||    
T  24280657 atagggtgtatgaataaagggtgttcacgtaacattttcc 24280696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 26898422 - 26898452
Alignment:
Q  16 agatgaacttaccaaaatatccctaatacat 46  Q
    |||||||||||||||||||||||||||||||    
T  26898422 agatgaacttaccaaaatatccctaatacat 26898452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 32029837 - 32029875
Alignment:
Q  16 agatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  32029837 agatgaatttaccaaaatatccctaatacatggggtgta 32029875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 44326261 - 44326231
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaata 43  Q
    |||||||||||||||||||||||||||||||    
T  44326261 gtgagatgaacttaccaaaatatccctaata 44326231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 4638216 - 4638257
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||| ||||| || |||||||    
T  4638216 gtgagatgaacttaccaaaatatccataatatatggggtgta 4638257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 10573832 - 10573791
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||| |||||||||||| |||||||||| |||||||    
T  10573832 gtgagatgaatttaccaaaatattcctaatacatggggtgta 10573791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 31513326 - 31513285
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttccaa 86  Q
    ||||||||||||| ||||| || |||||||||||||||||||    
T  31513326 atagggtgtatgattaaagagtgttcatgtaacattttccaa 31513285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 38160596 - 38160637
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||| |||| |||||||||||||||||| |||||||    
T  38160596 gtgagatgaagttactaaaatatccctaatacatggggtgta 38160637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 43317478 - 43317438
Alignment:
Q  49 ggtgtatgaataaagggtattcatgtaacattttccaattt 89  Q
    |||||||||||||| ||| ||||||||||||||||| ||||    
T  43317478 ggtgtatgaataaatggtgttcatgtaacattttcctattt 43317438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 11334 - 11293
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||||||||||||||||||| || |||||||    
T  11334 gtgagatgaacttaccaaaatatccctaatatatggggtgta 11293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 14205 - 14246
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||| ||||||||||||||||||||| ||||    
T  14205 gtgagatgaacttacaaaaatatccctaatacataggatgta 14246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 24533 - 24574
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    ||||||||||||||| ||||||||||||||||||||| ||||    
T  24533 gtgagatgaacttacaaaaatatccctaatacataggatgta 24574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 768 - 735
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacat 46  Q
    ||||||||||||||||||||||||||||||||||    
T  768 gtgagatgaacttaccaaaatatccctaatacat 735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 45780 - 45822
Alignment:
Q  45 atagggtgtatgaataaagggtattcatgtaacattttccaat 87  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||    
T  45780 atagggtgtatgattaaagggtgttcatgtaacatttttcaat 45822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 45736 - 45777
Alignment:
Q  13 gtgagatgaacttaccaaaatatccctaatacatagggtgta 54  Q
    |||||||||| |||||||||||||| ||||||||||| ||||    
T  45736 gtgagatgaatttaccaaaatatccttaatacataggatgta 45777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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