View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8856_low_1 (Length: 685)
Name: NF8856_low_1
Description: NF8856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8856_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 23)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 668
Target Start/End: Original strand, 3952854 - 3953506
Alignment:
| Q |
13 |
agcagagaaggcaatgtcaaacaatgctcccgaatcaaagtatgatgtttttgtaagctttaggggtgaggacatccgccacggctttcttggccatttg |
112 |
Q |
| |
|
|||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
3952854 |
agcagaaaagacaatgtcaaacaattctcccgaatcaaagtatgatgtttttgtaagctttaggggagaggacatccgccacggctttcttggtcatttg |
3952953 |
T |
|
| Q |
113 |
gctaaggctttttctcgaaagaaaataaatgcctttgttgatgacaaacttaagaggggagatgacatatcacattcactttttgaagcaattgaaggat |
212 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
3952954 |
gctaaggcttttcctcaaaagcaaataaatgcctttgttgatgacaaacttaagaggggagatgacatatca--ttcaatttttgaagcaattgaaggat |
3953051 |
T |
|
| Q |
213 |
cgttcatttcattgatcatattctcaaaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggaca |
312 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
3953052 |
cgttcatttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcagagagaaaaatggaca |
3953151 |
T |
|
| Q |
313 |
aattgtaatacctgttttctacgaggtagatcctacagatgtacgacatcaaaagaagagttatgaaaatgcacttgtagggcatgnnnnnnngtatatt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3953152 |
gattgtaatacctgttttctacgaggtaggtcctacagatgtacgacatcaaaagaagagttatgaaaatgcacttgtagggcatgaaaaaaattatatt |
3953251 |
T |
|
| Q |
413 |
ttgtcaagggttcaaaaatggagacaaactttggaaaaatgtgctaatttgtcaggaattaagtcattagattttcggttannnnnnncctctccataaa |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
3953252 |
ttgtcaagggttcaaaaatggagacaaactttggaaaaatctgctaatttgtcaggaattaagtcattagattttcagttagttttttcctctccataaa |
3953351 |
T |
|
| Q |
513 |
ttttca------------------atatttacttgtttcatatatagataataggtatgcataccggcataagctcatttgcttgaatagaaaaaagata |
594 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| | |
|
|
| T |
3953352 |
ttttcaatattttctagtagctatatatttacttctttcatacatagataataggtatgcatgccggcat-agctcatttgcttcaatagaaaaaagaaa |
3953450 |
T |
|
| Q |
595 |
taacctttatttcctctatttaactagagtgcatgcatattaattatatgtttacatccttaagttgttagttg |
668 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3953451 |
taaccttta------------------aatgcatgcatattaattatatgtttacatccttaagttgttagttg |
3953506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 385
Target Start/End: Complemental strand, 4026789 - 4026417
Alignment:
| Q |
13 |
agcagagaaggcaatgtcaaacaatgctcccgaatcaaagtatgatgtttttgtaagctttaggggtgaggacatccgccacggctttcttggccatttg |
112 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4026789 |
agcagaaaaggcaatgtctaacaatgctcctcaaccaaagtatgatgttttcgtaaactttaggggtgaggacatccgccacggctttcttggccatttg |
4026690 |
T |
|
| Q |
113 |
gctaaggctttttctcgaaagaaaataaatgcctttgttgatgacaaacttaagaggggagatgacatatcacattcactttttgaagcaattgaaggat |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||| ||||||| |
|
|
| T |
4026689 |
gctaaggctttttctcgaaagcaaataaatgcctttgttgatgacaaacttaagaggggagatgacatatcgaattcacttgtagaagcaatagaaggat |
4026590 |
T |
|
| Q |
213 |
cgttcatttcattgatcatattctcaaaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggaca |
312 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
4026589 |
cattcatttcattgatcatattctcagaaaactatgcttcttcaagttggtgtttagaagaacttttgaaaataattgattgcaaagagaaatatggaca |
4026490 |
T |
|
| Q |
313 |
aattgtaatacctgttttctacgaggtagatcctacagatgtacgacatcaaaagaagagttatgaaaatgca |
385 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| | |||||||||| ||| |||||||||| ||||||| |
|
|
| T |
4026489 |
gattgtaatacctgttttctatggggtagatcctacaaacgtacgacatctaaaaaagagttatggaaatgca |
4026417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 385
Target Start/End: Complemental strand, 4012032 - 4011660
Alignment:
| Q |
13 |
agcagagaaggcaatgtcaaacaatgctcccgaatcaaagtatgatgtttttgtaagctttaggggtgaggacatccgccacggctttcttggccatttg |
112 |
Q |
| |
|
|||||| |||||| |||||||| | ||||| |||||||| |||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
4012032 |
agcagaaaaggcaccgtcaaacatttctccccaatcaaaggatgatgtttttgtaagctttagaggtgaagacatccgccacggattttttggccatttg |
4011933 |
T |
|
| Q |
113 |
gctaaggctttttctcgaaagaaaataaatgcctttgttgatgacaaacttaagaggggagatgacatatcacattcactttttgaagcaattgaaggat |
212 |
Q |
| |
|
| || |||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
4011932 |
gttatcgcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatgtcacattcacttgttgaagcaattgaaggat |
4011833 |
T |
|
| Q |
213 |
cgttcatttcattgatcatattctcaaaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggaca |
312 |
Q |
| |
|
| |||||||||| ||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4011832 |
ctcccatttcattggtcatattctcataaaactatgcttgttcacattggtgtttagaagaacttgcgaaaataattgagtgcaaagagaaatatggaca |
4011733 |
T |
|
| Q |
313 |
aattgtaatacctgttttctacgaggtagatcctacagatgtacgacatcaaaagaagagttatgaaaatgca |
385 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4011732 |
gattgtaatacctgttttctatggggtagatcctacaaatgtacgacatcaaaagaagagttatgaaaatgca |
4011660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 25 - 385
Target Start/End: Complemental strand, 3812232 - 3811872
Alignment:
| Q |
25 |
aatgtcaaacaatgctcccgaatcaaagtatgatgtttttgtaagctttaggggtgaggacatccgccacggctttcttggccatttggctaaggctttt |
124 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| ||||||||||| |||||||| |
|
|
| T |
3812232 |
aatgccaaacaatactcctcaatcaaagtatgatgtttttgtaagctttaggggcgaggacatccgcaagttctttcttagccatttggctgaggctttt |
3812133 |
T |
|
| Q |
125 |
tctcgaaagaaaataaatgcctttgttgatgacaaacttaagaggggagatgacatatcacattcactttttgaagcaattgaaggatcgttcatttcat |
224 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | |||||||| |||||||| |||||||| |
|
|
| T |
3812132 |
tctcgaaagcaaataaatgcctttcttgatgagaaacttaagaggggagatgacatatcacattcacttgtagaagcaatggaaggatctcccatttcat |
3812033 |
T |
|
| Q |
225 |
tgatcatattctcaaaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggacaaattgtaatacc |
324 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
3812032 |
tggtcatattctcagaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataattgagtgcaaagagacatatggacattttgtaatacc |
3811933 |
T |
|
| Q |
325 |
tgttttctacgaggtagatcctacagatgtacgacatcaaaagaagagttatgaaaatgca |
385 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3811932 |
tattttctacggagtagatcctacagatgtacgacatcaaaagaagagttatgaaaatgca |
3811872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 376
Target Start/End: Complemental strand, 4003553 - 4003190
Alignment:
| Q |
13 |
agcagagaaggcaatgtcaaacaatgctcccgaatcaaagtatgatgtttttgtaagctttaggggtgaggacatccgccacggctttcttggccatttg |
112 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
4003553 |
agcagaaaaggcaatgtcaaacgatgctccccaattaaagtatgatgtttttgtaagctttaggggcgaggacatccgtcacggatttcttggccatttg |
4003454 |
T |
|
| Q |
113 |
gctaaggctttttctcgaaagaaaataaatgcctttgttgatgacaaacttaagaggggagatgacatatcacattcactttttgaagcaattgaaggat |
212 |
Q |
| |
|
||| |||||| |||| || ||||||||||||||||||| || |||||||||||||||||||| ||||||||| ||||| | |||||||||||||||| |
|
|
| T |
4003453 |
attaaagcttttcctcgtaaacaaataaatgcctttgttgacgaaaaacttaagaggggagatgatatatcacatgcacttgtagaagcaattgaaggat |
4003354 |
T |
|
| Q |
213 |
cgttcatttcattgatcatattctcaaaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggaca |
312 |
Q |
| |
|
| |||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4003353 |
cattcatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggacg |
4003254 |
T |
|
| Q |
313 |
aattgtaatacctgttttctacgaggtagatcctacagatgtacgacatcaaaagaagagttat |
376 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
4003253 |
gattgttttacctgttttctatggggtagatcctacaaatgtaagacatcaaaagaagagttat |
4003190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 25 - 385
Target Start/End: Complemental strand, 3821805 - 3821445
Alignment:
| Q |
25 |
aatgtcaaacaatgctcccgaatcaaagtatgatgtttttgtaagctttaggggtgaggacatccgccacggctttcttggccatttggctaaggctttt |
124 |
Q |
| |
|
|||| |||||||| |||| ||| |||||||||||||||||||||||||||||| ||||| ||||||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
3821805 |
aatgccaaacaatactcctcaattaaagtatgatgtttttgtaagctttaggggcgaggatatccgccacagctttcttagccatttggttaaggctttt |
3821706 |
T |
|
| Q |
125 |
tctcgaaagaaaataaatgcctttgttgatgacaaacttaagaggggagatgacatatcacattcactttttgaagcaattgaaggatcgttcatttcat |
224 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3821705 |
cctcgaaagcaaataaatgcctttgttgatgacgcacttacgaggggagatgacatatcacattcactttttgaagcaattgaaggatctcccatttcat |
3821606 |
T |
|
| Q |
225 |
tgatcatattctcaaaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggacaaattgtaatacc |
324 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||| |||| |
|
|
| T |
3821605 |
tggtcatattctcaaaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataatcgagtgcaaagagaaatatggacagattgtattacc |
3821506 |
T |
|
| Q |
325 |
tgttttctacgaggtagatcctacagatgtacgacatcaaaagaagagttatgaaaatgca |
385 |
Q |
| |
|
| ||||||||| ||| | || ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3821505 |
tattttctacggagtaaaacccacaaatgtacgacatcaaaagaagagttatgaaaatgca |
3821445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 47 - 385
Target Start/End: Original strand, 3915844 - 3916182
Alignment:
| Q |
47 |
tcaaagtatgatgtttttgtaagctttaggggtgaggacatccgccacggctttcttggccatttggctaaggctttttctcgaaagaaaataaatgcct |
146 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| ||||| |||||||||| ||||||||| ||||||||||| || |||| |||||||||| | |
|
|
| T |
3915844 |
tcaaagtatgatgtttttgtaagctttagtggcaaggaaatccgtagcggctttcttagccatttggttaaggctttttgtcaaaagcaaataaatgctt |
3915943 |
T |
|
| Q |
147 |
ttgttgatgacaaacttaagaggggagatgacatatcacattcactttttgaagcaattgaaggatcgttcatttcattgatcatattctcaaaaaacta |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
3915944 |
ttgttgatgacaaacttaagaggggagatgacatatcagattcacttggtgaagcaatcgaaggatcattcatttcattgatcatattctcagaaaacta |
3916043 |
T |
|
| Q |
247 |
tgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggacaaattgtaatacctgttttctacgaggtagatcct |
346 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||| | |||||||||| |
|
|
| T |
3916044 |
tgcttgttcacattggtgtttaaaagaacttgtgaaaatagttgagtgtaaagagaaatatgcacaaattgtaatacctgttttcttcagggtagatcct |
3916143 |
T |
|
| Q |
347 |
acagatgtacgacatcaaaagaagagttatgaaaatgca |
385 |
Q |
| |
|
|||||| ||||||||||||| | |||||||||||||||| |
|
|
| T |
3916144 |
acagatatacgacatcaaaaaaggagttatgaaaatgca |
3916182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 390
Target Start/End: Complemental strand, 4221055 - 4220678
Alignment:
| Q |
13 |
agcagagaaggcaatgtcaaacaatgctcccgaatcaaagtatgatgtttttgtaagctttaggggtgaggacatccgccacggctttcttggccatttg |
112 |
Q |
| |
|
|||||| || ||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| | || ||||| |||||||||||||| | ||| |
|
|
| T |
4221055 |
agcagaaaaagcaatgtcaaacaatactcctaaatcaaagtttgatgtttttgtaagctttaggggaaatgatgtccgcgacggctttcttggcaaattg |
4220956 |
T |
|
| Q |
113 |
gctaaggctttttctcgaaagaaaataaatgcctttgttgatgacaaacttaagaggggagatgacatatcacattcactttttgaagcaattgaaggat |
212 |
Q |
| |
|
| |||||||| |||||| |||||||| |||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4220955 |
tatgaggcttttattcgaaaacaaataaatatctttgttgattacaaacttaagaaaggagatgacatatcacattcacttggtgaagcaattgaaggat |
4220856 |
T |
|
| Q |
213 |
cgttcatttcattgatcatattctcaaaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggaca |
312 |
Q |
| |
|
| | |||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
4220855 |
catccatttcattggtcatattctctgaaaactatgcttcttcacattggtgtttagaagaacttgtaaaaataattgagtgcagagagaaatatggaca |
4220756 |
T |
|
| Q |
313 |
aattgtaatacctgttttctacgaggtagatcctacagatgtacgacatcaaaagaagagttatgaaaatgcacttgt |
390 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
4220755 |
acttgtaatacctattttctacgaggtagatcctacaaatgtacgatatcaaaagaagagttatgaaaatgcatttgt |
4220678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 47 - 385
Target Start/End: Original strand, 3926838 - 3927176
Alignment:
| Q |
47 |
tcaaagtatgatgtttttgtaagctttaggggtgaggacatccgccacggctttcttggccatttggctaaggctttttctcgaaagaaaataaatgcct |
146 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||| || | |||||||| ||||||||| |||||||||| || |||| |||||||||| | |
|
|
| T |
3926838 |
tcaaagtatgatgtttttgtaagctttagtggcaaggacattcgtagcagctttcttagccatttggttaaggcttttcttcaaaagcaaataaatgctt |
3926937 |
T |
|
| Q |
147 |
ttgttgatgacaaacttaagaggggagatgacatatcacattcactttttgaagcaattgaaggatcgttcatttcattgatcatattctcaaaaaacta |
246 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||| |||||||| |||||||||| ||||||| | ||||| ||||||||||| ||| |||| || |
|
|
| T |
3926938 |
ttgttgatgacaaacttcacaggggagatgacatatcagattcacttgttgaagcaatcaaaggatcatccattttgttgatcatattttcagaaaaata |
3927037 |
T |
|
| Q |
247 |
tgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggacaaattgtaatacctgttttctacgaggtagatcct |
346 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
3927038 |
tgcttgttcacattggtgtttagaagaacttgtgaaaatagttgagtgtaaagagaaatatgcacaaattgtaatacccgttttctaccgggtagatcct |
3927137 |
T |
|
| Q |
347 |
acagatgtacgacatcaaaagaagagttatgaaaatgca |
385 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
3927138 |
acagatgtacgacatcaaaaaaggagttatgaaaatgca |
3927176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 24 - 333
Target Start/End: Complemental strand, 3988431 - 3988122
Alignment:
| Q |
24 |
caatgtcaaacaatgctcccgaatcaaagtatgatgtttttgtaagctttaggggtgaggacatccgccacggctttcttggccatttggctaaggcttt |
123 |
Q |
| |
|
||||||||| ||| |||||| ||||||| |||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
3988431 |
caatgtcaaccaacgctccccaatcaaaatatgatgtttttgtgagctttaggggcaaggacatccgagacggctttcttggccatttggttaaggcttt |
3988332 |
T |
|
| Q |
124 |
ttctcgaaagaaaataaatgcctttgttgatgacaaacttaagaggggagatgacatatcacattcactttttgaagcaattgaaggatcgttcatttca |
223 |
Q |
| |
|
| || |||||||||||||| |||||| || ||| | |||||||||||||||| || |||||||||| |||||||||||||||| ||||| |||||| |
|
|
| T |
3988331 |
tcgtcaaaagaaaataaatgtctttgtagacaacataattaagaggggagatgaaatcaaacattcacttgttgaagcaattgaaggctcgttaatttca |
3988232 |
T |
|
| Q |
224 |
ttgatcatattctcaaaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggacaaattgtaatac |
323 |
Q |
| |
|
||| |||||||||||||||| ||| ||||||||| |||||||||||| ||||||||||||||||| ||||||||| || | |||||| ||| |||||| |
|
|
| T |
3988231 |
ttggtcatattctcaaaaaattattcttcttcacattggtgtttagatgaacttgtgaaaataatcgagtgcaaaaaggatcgtggacagattataatac |
3988132 |
T |
|
| Q |
324 |
ctgttttcta |
333 |
Q |
| |
|
|||||||||| |
|
|
| T |
3988131 |
ctgttttcta |
3988122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 127 - 390
Target Start/End: Original strand, 3962360 - 3962623
Alignment:
| Q |
127 |
tcgaaagaaaataaatgcctttgttgatgacaaacttaagaggggagatgacatatcacattcactttttgaagcaattgaaggatcgttcatttcattg |
226 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||| |||| |||||| | |||||||||||||||||| ||||| ||| |
|
|
| T |
3962360 |
tcgaaagaaaataaaagcctttgtagatgataaacttaagaggggagatgaaataccacaatcacttgtcagagcaattgaaggatcgttaatttccttg |
3962459 |
T |
|
| Q |
227 |
atcatattctcaaaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggacaaattgtaatacctg |
326 |
Q |
| |
|
|||||||| ||| | |||||||||||||| |||||||||||||||||||||| | || | || | |||| ||||||||||||||| || || |||||| |
|
|
| T |
3962460 |
atcatattttcacacgactatgcttcttcatgttggtgtttagaagaacttgttacaacacttcaatgcagagagaaatatggacagatcgttataccta |
3962559 |
T |
|
| Q |
327 |
ttttctacgaggtagatcctacagatgtacgacatcaaaagaagagttatgaaaatgcacttgt |
390 |
Q |
| |
|
|||| || |||||||||||||||||||| || ||||||| ||||||||||| |||||| |||| |
|
|
| T |
3962560 |
ttttttatcaggtagatcctacagatgtaagatatcaaaacaagagttatgataatgcatttgt |
3962623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 98 - 390
Target Start/End: Complemental strand, 4019744 - 4019452
Alignment:
| Q |
98 |
tttcttggccatttggctaaggctttttctcgaaagaaaataaatgcctttgttgatgacaaacttaagaggggagatgacatatcacattcactttttg |
197 |
Q |
| |
|
|||||| |||||||| | ||||||| ||||||||||||||| |||||||||||||| | ||||||||||||||||| ||| ||| |||||| | |
|
|
| T |
4019744 |
tttcttagccatttgattgaggctttacgtcgaaagaaaataaaagcctttgttgatgatgagcttaagaggggagatgaaatactacaatcacttgtca |
4019645 |
T |
|
| Q |
198 |
aagcaattgaaggatcgttcatttcattgatcatattctcaaaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaa |
297 |
Q |
| |
|
|| |||||||||||| || ||||| ||||||||||||||| || |||||||||||||||| |||||||| ||||||||||| | |||| || | |||| |
|
|
| T |
4019644 |
gaggaattgaaggatcattaatttccttgatcatattctcacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcag |
4019545 |
T |
|
| Q |
298 |
agagaaatatggacaaattgtaatacctgttttctacgaggtagatcctacagatgtacgacatcaaaagaagagttatgaaaatgcacttgt |
390 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| || | | |||||||| |||||||| || |||||| ||||||||||||||||||| |||| |
|
|
| T |
4019544 |
agagaaatatggacaaattgttgtacctattttttatgggatagatcctgcagatgtaagatatcaaatgaagagttatgaaaatgcatttgt |
4019452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 130 - 330
Target Start/End: Complemental strand, 3825955 - 3825755
Alignment:
| Q |
130 |
aaagaaaataaatgcctttgttgatgacaaacttaagaggggagatgacatatcacattcactttttgaagcaattgaaggatcgttcatttcattgatc |
229 |
Q |
| |
|
|||| ||||||| |||||||||||||| ||||||||||||||||||| ||| |||| |||||| | || || ||||||||| || ||||| |||||| |
|
|
| T |
3825955 |
aaaggaaataaaagcctttgttgatgatgaacttaagaggggagatgaaataccacaatcacttgtaagaggaaatgaaggatcattaatttccttgatc |
3825856 |
T |
|
| Q |
230 |
atattctcaaaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggacaaattgtaatacctgttt |
329 |
Q |
| |
|
||||||||| || |||||||||||||| |||||||||||||||||| ||| | |||| | | |||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
3825855 |
atattctcacaagactatgcttcttcatgttggtgtttagaagaacatgtcacaatacgtcaatgcagagagaaatatggacaaattgttatacctgttt |
3825756 |
T |
|
| Q |
330 |
t |
330 |
Q |
| |
|
| |
|
|
| T |
3825755 |
t |
3825755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 3792804 - 3792676
Alignment:
| Q |
128 |
cgaaagaaaataaatgcctttgttgatgacaaacttaagaggggagatgacatatcacattcactttttgaagcaattgaaggatcgttcatttcattga |
227 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||||||||||||||||| ||| |||| |||||| | || || ||||||||| || ||||| |||| |
|
|
| T |
3792804 |
cgaaaggaaataaaagcctttgttgatgatgaacttaagaggggagatgaaataccacaatcacttgtaagaggaaatgaaggatcattaatttccttga |
3792705 |
T |
|
| Q |
228 |
tcatattctcaaaaaactatgcttcttca |
256 |
Q |
| |
|
||||||||||| || |||||||||||||| |
|
|
| T |
3792704 |
tcatattctcacaagactatgcttcttca |
3792676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 244 - 390
Target Start/End: Complemental strand, 3805874 - 3805728
Alignment:
| Q |
244 |
ctatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggacaaattgtaatacctgttttctacgaggtagat |
343 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||| | |||| || | |||| | ||||||||||||| ||||| |||||| |||| || | | ||||| |
|
|
| T |
3805874 |
ctatgcttcttcatgttggtgtttggacgaacttgtcacaatacttcaatgcagaaagaaatatggacagattgttatacctattttttatgggatagat |
3805775 |
T |
|
| Q |
344 |
cctacagatgtacgacatcaaaagaagagttatgaaaatgcacttgt |
390 |
Q |
| |
|
||| |||||||| || |||||| |||| |||||||||||||| |||| |
|
|
| T |
3805774 |
cctgcagatgtaagatatcaaatgaagggttatgaaaatgcatttgt |
3805728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 630
Target Start/End: Complemental strand, 4002990 - 4002924
Alignment:
| Q |
564 |
taagctcatttgcttgaatagaaaaaagatataacctttatttcctctatttaactagagtgcatgc |
630 |
Q |
| |
|
||||||||||||||| |||||||||||| || ||||||||| |||||||| |||||||||||||| |
|
|
| T |
4002990 |
taagctcatttgcttagatagaaaaaagacattacctttattctctctattttactagagtgcatgc |
4002924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 431 - 493
Target Start/End: Complemental strand, 4003135 - 4003073
Alignment:
| Q |
431 |
tggagacaaactttggaaaaatgtgctaatttgtcaggaattaagtcattagattttcggtta |
493 |
Q |
| |
|
|||||||| ||||| | |||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4003135 |
tggagacacgctttgaacaaatctgctaatttgtctggaattaagtcattagattttcggtta |
4003073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 4318238 - 4318304
Alignment:
| Q |
152 |
gatgacaaacttaagaggggagatgacatatcacattcactttttgaagcaattgaaggatcgttca |
218 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||||||| || ||||||||||| ||||||| |||| |
|
|
| T |
4318238 |
gatgacaagcttaagaggggggatgaaatatcacattcatttgttgaagcaattaaaggatcattca |
4318304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 449 - 493
Target Start/End: Complemental strand, 4026353 - 4026309
Alignment:
| Q |
449 |
aaatgtgctaatttgtcaggaattaagtcattagattttcggtta |
493 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
4026353 |
aaatctgctaacttgtcaggaattaagtcattagattatcggtta |
4026309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 390
Target Start/End: Complemental strand, 3948347 - 3948292
Alignment:
| Q |
335 |
gaggtagatcctacagatgtacgacatcaaaagaagagttatgaaaatgcacttgt |
390 |
Q |
| |
|
|||||||||||| |||||||| || |||||| |||| |||||||||||||| |||| |
|
|
| T |
3948347 |
gaggtagatcctgcagatgtaagatatcaaatgaagggttatgaaaatgcatttgt |
3948292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 493
Target Start/End: Complemental strand, 4011591 - 4011552
Alignment:
| Q |
454 |
tgctaatttgtcaggaattaagtcattagattttcggtta |
493 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4011591 |
tgctaatttgtcaggaattaagtcatctgattttcggtta |
4011552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 491
Target Start/End: Original strand, 3962664 - 3962724
Alignment:
| Q |
431 |
tggagacaaactttggaaaaatgtgctaatttgtcaggaattaagtcattagattttcggt |
491 |
Q |
| |
|
|||||||| ||||| | |||| ||||||||| || ||||||||||||| ||||||||||| |
|
|
| T |
3962664 |
tggagacatgctttgaacaaatctgctaatttatctggaattaagtcatcagattttcggt |
3962724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 491
Target Start/End: Complemental strand, 4019411 - 4019351
Alignment:
| Q |
431 |
tggagacaaactttggaaaaatgtgctaatttgtcaggaattaagtcattagattttcggt |
491 |
Q |
| |
|
|||||||| ||||| | |||| ||||||||| || ||||||||||||| ||||||||||| |
|
|
| T |
4019411 |
tggagacatgctttgaacaaatctgctaatttatctggaattaagtcatcagattttcggt |
4019351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 35 - 390
Target Start/End: Complemental strand, 13399372 - 13399017
Alignment:
| Q |
35 |
aatgctcccgaatcaaagtatgatgtttttgtaagctttaggggtgaggacatccgccacggctttcttggccatttggctaaggctttttctcgaaaga |
134 |
Q |
| |
|
||||||||| |||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
13399372 |
aatgctccccaatcaatatacgatgtttttgtaagctttaggggtgaggacatccaccacggctttcttggccatttgtttaaggctttttctcaaaagc |
13399273 |
T |
|
| Q |
135 |
aaataaatgcctttgttgatgacaaacttaagaggggagatgacatatcacattcactttttgaagcaattgaaggatcgttcatttcattgatcatatt |
234 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
13399272 |
aaataaatgtctttgttgacgacaaacttaagaggggaaatgacatatcacattcactttttgaagcaatcgaaggatcatttatttcattgatcatatt |
13399173 |
T |
|
| Q |
235 |
ctcaaaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggacaaattgtaatacctgttttctac |
334 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13399172 |
ctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaagagaaatatggacaaattgtaatacctgttttctac |
13399073 |
T |
|
| Q |
335 |
gaggtagatcctacagatgtacgacatcaaaagaagagttatgaaaatgcacttgt |
390 |
Q |
| |
|
| |||||||| || |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13399072 |
ggagtagatcccaccgatgtacgacatcaaaagaagagttatgaaaatgcatttgt |
13399017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 519 - 640
Target Start/End: Complemental strand, 13398870 - 13398749
Alignment:
| Q |
519 |
atatttacttgtttcatatatagataataggtatgcataccggcataagctcatttgcttgaatagaaaaaagatataacctttatttcctctatttaac |
618 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| || |||| ||||||||||||| ||||| |||||| | ||| |||||||| |||||||| || |
|
|
| T |
13398870 |
atatttacttgtttcatgtatagataatagtaatgcaagccagcattagctcatttgcttaaatagcaaaaagttgtaatctttattttctctattttac |
13398771 |
T |
|
| Q |
619 |
tagagtgcatgcatattaatta |
640 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
13398770 |
tagagtgcatgcatatgaatta |
13398749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 7070038 - 7069945
Alignment:
| Q |
174 |
atgacatatcacattcactttttgaagcaattgaaggatcgttcatttcattgatcatattctcaaaaaactatgcttcttcacgttggtgttt |
267 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||| ||| | |||||||| |||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
7070038 |
atgaaatatcacagtcactttttgaagcaattgaaacatcttcaatttcattagtcatattctctcaaaactatgcttcttcatcttggtgttt |
7069945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 330
Target Start/End: Complemental strand, 7087105 - 7086948
Alignment:
| Q |
173 |
gatgacatatcacattcactttttgaagcaattgaaggatcgttcatttcattgatcatattctcaaaaaactatgcttcttcacgttggtgtttagaag |
272 |
Q |
| |
|
||||| ||| |||| |||||||||||||| |||||| ||| | |||||||| |||||||||| ||||||||||||||||| |||||||| || | |
|
|
| T |
7087105 |
gatgaaatagcacaatcactttttgaagctattgaaacatcttcaatttcattagtcatattctctcaaaactatgcttcttcaaaatggtgtttggatg |
7087006 |
T |
|
| Q |
273 |
aacttgtgaaaataattgagtgcaaagagaaatatggacaaattgtaatacctgtttt |
330 |
Q |
| |
|
| ||||| ||||| ||||||| | ||||||| ||||||| ||| || | |||||||| |
|
|
| T |
7087005 |
agcttgtcaaaattgttgagtgtagagagaaagatggacagattttattgcctgtttt |
7086948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 7035393 - 7035490
Alignment:
| Q |
199 |
agcaattgaaggatcgttcatttcattgatcatattctcaaaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgca |
296 |
Q |
| |
|
|||||||||| ||| || ||||||||| ||||||| ||| ||||| ||| ||||||| ||||||||| || || |||||||||||| | ||||||| |
|
|
| T |
7035393 |
agcaattgaaaaatcattgatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgca |
7035490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 349
Target Start/End: Complemental strand, 7100717 - 7100541
Alignment:
| Q |
173 |
gatgacatatcacattcactttttgaagcaattgaaggatcgttcatttcattgatcatattctcaaaaaactatgcttcttcacgttggtgtttagaag |
272 |
Q |
| |
|
||||| ||| |||| |||||| ||||| | |||||| |||||| ||||| ||| |||||||||| |||||||||||||||| |||||||| || | |
|
|
| T |
7100717 |
gatgaaatagcacaatcacttcttgaaactattgaaacatcgttgatttctttggtcatattctctcaaaactatgcttcttcgtcgtggtgtttggatg |
7100618 |
T |
|
| Q |
273 |
aacttgtgaaaataattgagtgcaaagagaaatatggacaaattgtaatacctgttttctacgaggtagatcctaca |
349 |
Q |
| |
|
| | || ||||| ||||||| | |||||| ||||||| ||| || | |||||||||||| | || ||||||||| |
|
|
| T |
7100617 |
agttagtcaaaattgttgagtgtagggagaaagatggacatattttattgcctgttttctacaaagttgatcctaca |
7100541 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 309
Target Start/End: Complemental strand, 7078537 - 7078427
Alignment:
| Q |
199 |
agcaattgaaggatcgttcatttcattgatcatattctcaaaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaaa |
298 |
Q |
| |
|
|||||||||| ||| |||||||||||| | |||||||| ||||| ||| |||||| ||||||| | || || |||||||||||| ||||||| | | |
|
|
| T |
7078537 |
agcaattgaaaaatcattcatttcattggttatattctctccaaactttgcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtaga |
7078438 |
T |
|
| Q |
299 |
gagaaatatgg |
309 |
Q |
| |
|
|| |||||||| |
|
|
| T |
7078437 |
gaaaaatatgg |
7078427 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 7028691 - 7028788
Alignment:
| Q |
199 |
agcaattgaaggatcgttcatttcattgatcatattctcaaaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgca |
296 |
Q |
| |
|
|||||||||| ||| || ||||||||| ||||||| || ||||| ||| ||||||| ||||||||| || || |||||||||||| | ||||||| |
|
|
| T |
7028691 |
agcaattgaaaaatcattgatttcattggtcatattttctccaaactttgcatcttcacattggtgtttggacgagcttgtgaaaatagtcgagtgca |
7028788 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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