View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8856_low_3 (Length: 369)

Name: NF8856_low_3
Description: NF8856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8856_low_3
NF8856_low_3
[»] chr3 (3 HSPs)
chr3 (1-357)||(18028174-18028529)
chr3 (59-165)||(31067388-31067494)
chr3 (94-195)||(51525105-51525207)
[»] scaffold0531 (1 HSPs)
scaffold0531 (59-195)||(10471-10608)
[»] chr2 (2 HSPs)
chr2 (59-195)||(13502796-13502933)
chr2 (146-195)||(18811484-18811534)
[»] chr4 (3 HSPs)
chr4 (59-195)||(19852696-19852833)
chr4 (59-195)||(16593540-16593677)
chr4 (95-195)||(37050277-37050377)
[»] chr8 (5 HSPs)
chr8 (59-195)||(3072284-3072421)
chr8 (66-191)||(399518-399644)
chr8 (58-165)||(28225486-28225593)
chr8 (139-195)||(8831020-8831077)
chr8 (92-195)||(27786557-27786661)
[»] chr6 (4 HSPs)
chr6 (59-195)||(13535297-13535434)
chr6 (95-166)||(25168119-25168190)
chr6 (81-166)||(2606643-2606728)
chr6 (70-162)||(4263145-4263237)
[»] chr1 (5 HSPs)
chr1 (59-195)||(3374486-3374623)
chr1 (84-195)||(39332564-39332676)
chr1 (84-195)||(19393911-19394021)
chr1 (92-195)||(41034789-41034893)
chr1 (103-166)||(44163534-44163597)
[»] chr7 (1 HSPs)
chr7 (84-195)||(33191510-33191623)
[»] chr5 (3 HSPs)
chr5 (144-195)||(15188265-15188317)
chr5 (103-188)||(37306954-37307038)
chr5 (92-191)||(36868538-36868638)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 18028529 - 18028174
Alignment:
Q  1 tgttcggccccttgctccagatctatgattttcccgtggactttcctttcctcgtaacatggtggacttagccacctctctccttaggatctttccttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18028529 tgttcggccccttgctccagatctatgattttcccgtggactttcctttcctcgtaacatggtggacttagccacctctctccttaggatctttccttta 18028430  T
Q  101 tagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtattggttcagg-atctcatgtcttttacattttagtgctttcatn 199  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||     
T  18028429 tagggatagatctaatttttcttttcgcagcttatacactttttgactctgttgtattggttcaggcatctcatatcttttatattttagtgctttgat- 18028331  T
Q  200 nnnnnnntaagtctaggagtaacttcaatttttaatattttcaagtaaaatatatgatggtttgtaggggtttcttagacattagatgtaaagctgtcat 299  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18028330 aaaaaaataagtctaggagtaacttcaatttttaatattttcaagtaaaatatatgatggtttgtaggggtttcttagacattagatgtaaagctgtcat 18028231  T
Q  300 ggtgaggtagaatataacttgtcacatattagctaggggtcttttctttgaacaccaa 357  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  18028230 ggtgaggtagaatataacttgtcacatattagcta-aggtcttttctttgaacaccaa 18028174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 59 - 165
Target Start/End: Original strand, 31067388 - 31067494
Alignment:
Q  59 atggtggacttagccacctctctccttaggatctttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtatt 158  Q
    ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||| |||||||| | | ||||||| |||| ||||||||||||| |    
T  31067388 atggtggacttagccacctctttccttaggatctttcttttagagggatagatctagtctttctttttgaaagttatacgctttctgactctgttgtact 31067487  T
Q  159 ggttcag 165  Q
    |||||||    
T  31067488 ggttcag 31067494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 51525105 - 51525207
Alignment:
Q  94 tcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtattggttcagg-atctcatgtcttttacattttagtgc 192  Q
    |||||| | ||||||||||  | ||| ||||||  ||||| ||||| || | ||||||||||||||| |||||  |||| ||||||||| ||||||||||    
T  51525105 tcctttcttgggatagatccggatttacttttcataggttttacacattgtaactctgttgtattggctcaggcctctcctgtcttttatattttagtgc 51525204  T
Q  193 ttt 195  Q
    |||    
T  51525205 ttt 51525207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 10471 - 10608
Alignment:
Q  59 atggtggacttagccacctctctccttaggatc-tttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtat 157  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||    
T  10471 atggtggacttagccacctctttccttaggatcctttcctttatagggatagatctagtctttctttccgcaggttatacgctttctgactctgttgtat 10570  T
Q  158 tggttcagg-atctcatgtcttttacattttagtgcttt 195  Q
    ||||||||| ||||| ||||||||  |||||||||||||    
T  10571 tggttcaggcatctcctgtctttt-tattttagtgcttt 10608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 13502796 - 13502933
Alignment:
Q  59 atggtggacttagccacctctctccttaggatctttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtatt 158  Q
    |||||||| |||||||||||  |||||||||||||||| ||||| || ||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  13502796 atggtggaattagccacctccttccttaggatctttccattataagggtagatctagttttccttttcgcaggttatacactttctgactctgttgtatt 13502895  T
Q  159 ggttca-ggatctcatgtcttttacattttagtgcttt 195  Q
    | |||| | ||||| ||||||||| |||||||||||||    
T  13502896 gattcatgcatctcctgtcttttatattttagtgcttt 13502933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 18811534 - 18811484
Alignment:
Q  146 actctgttgtattggttcagg-atctcatgtcttttacattttagtgcttt 195  Q
    |||||||||||||||||||||  |||| ||||||||| |||||||||||||    
T  18811534 actctgttgtattggttcaggcctctcctgtcttttatattttagtgcttt 18811484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 19852696 - 19852833
Alignment:
Q  59 atggtggacttagccacctctctccttaggatct-ttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtat 157  Q
    |||||| |||||| ||||||| |||||||||||  |||||||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||    
T  19852696 atggtgtacttagtcacctctttccttaggatcccttcctttatagggatagatctagtctttctttccgcaggttatacgctttctgactctgttgtat 19852795  T
Q  158 tggttcagg-atctcatgtcttttacattttagtgcttt 195  Q
    ||||||||| ||||| ||||||||  |||||||||||||    
T  19852796 tggttcaggcatctcctgtctttt-tattttagtgcttt 19852833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 59 - 195
Target Start/End: Complemental strand, 16593677 - 16593540
Alignment:
Q  59 atggtggacttagccacctctctccttaggatct-ttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtat 157  Q
    ||||||||||||| ||||||| | |||||||||  |||||||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||    
T  16593677 atggtggacttagtcacctcttttcttaggatcccttcctttatagggatagatctagtctttctttccgcaggttatacgctttctgactctgttgtat 16593578  T
Q  158 tggttcag-gatctcatgtcttttacattttagtgcttt 195  Q
    ||||||||  ||||| ||||||||  |||||||||||||    
T  16593577 tggttcagacatctcctgtctttt-tattttagtgcttt 16593540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 37050277 - 37050377
Alignment:
Q  95 cctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtattggttcagg-atctcatgtcttttacattttagtgct 193  Q
    ||||||| |||||||||| ||||| |||||||  ||||| |||||| | |||||||||||||||||||| ||  ||||||| |||||| |||||| ||||    
T  37050277 cctttattgggatagatccagtttctcttttcataggttttacactatgtgactctgttgtattggttcgggcctctcatg-cttttatattttattgct 37050375  T
Q  194 tt 195  Q
    ||    
T  37050376 tt 37050377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 59 - 195
Target Start/End: Complemental strand, 3072421 - 3072284
Alignment:
Q  59 atggtggacttagccacctctctccttaggatctttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtatt 158  Q
    ||||||||||||||||||||| ||||   ||| ||||| ||| ||||||||||||| |||| |||||||||||||||||||||  ||||| |||||||||    
T  3072421 atggtggacttagccacctctttcctctagatgtttccgttacagggatagatctaattttccttttcgcaggttatacacttactgactttgttgtatt 3072322  T
Q  159 ggttcagg-atctcatgtcttttacattttagtgcttt 195  Q
    |||||||| ||||| ||||||||| |||||||||||||    
T  3072321 ggttcaggcatctcctgtcttttatattttagtgcttt 3072284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 66 - 191
Target Start/End: Complemental strand, 399644 - 399518
Alignment:
Q  66 acttagccacctctctccttaggatctttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtattggttcag 165  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||| |   |||| ||| || | ||||||||||||||||||||    
T  399644 acttagccacctctttccttaggttctttcctttatagggatagatctggattttcttttcacgtattattcaccttgtaactctgttgtattggttcag 399545  T
Q  166 g-atctcatgtcttttacattttagtg 191  Q
    | ||||| ||||||||| |||||||||    
T  399544 gcatctcctgtcttttatattttagtg 399518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 28225593 - 28225486
Alignment:
Q  58 catggtggacttagccacctctctccttaggatctttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtat 157  Q
    |||||| || |||| ||||||| ||||||||| ||||| |||  ||| ||| |||||| |||||||||| || ||||| |||||  ||||| ||||||||    
T  28225593 catggtagaattagtcacctctttccttaggacctttcttttcaaggaataaatctagattttcttttcacatgttatccacttcgtgactatgttgtat 28225494  T
Q  158 tggttcag 165  Q
    ||||||||    
T  28225493 tggttcag 28225486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 8831077 - 8831020
Alignment:
Q  139 ctttttgactctgttgtattggttcagg-atctcatgtcttttacattttagtgcttt 195  Q
    |||| ||||| ||||||||||||||||  ||||| ||||||||| |||||||||||||    
T  8831077 ctttctgactttgttgtattggttcagacatctcctgtcttttatattttagtgcttt 8831020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 195
Target Start/End: Complemental strand, 27786661 - 27786557
Alignment:
Q  92 tttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtattggttcagg-atctcatgtcttttacattttagt 190  Q
    |||||||| | ||||||||||    ||||||||||  ||||  ||||| || ||||| |||||||||||||||||  |||| ||| ||||| ||||||||    
T  27786661 tttcctttcttgggatagatccgacttttcttttcataggtcttacacattgtgactttgttgtattggttcaggcctctcctgtattttatattttagt 27786562  T
Q  191 gcttt 195  Q
    |||||    
T  27786561 gcttt 27786557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 13535297 - 13535434
Alignment:
Q  59 atggtggacttagccacctctctccttaggatc-tttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtat 157  Q
    ||||||||||||  ||||||| ||||||||||| |||||||||  |||||||||||||| ||||||| |||||||||||| ||||  |||||| ||||||    
T  13535297 atggtggacttaagcacctctttccttaggatcctttcctttacggggatagatctagtctttctttccgcaggttatacgctttccgactctattgtat 13535396  T
Q  158 tggttcag-gatctcatgtcttttacattttagtgcttt 195  Q
    ||||||||  ||||| ||||||||  |||||||||||||    
T  13535397 tggttcagacatctcctgtctttt-tattttagtgcttt 13535434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 25168119 - 25168190
Alignment:
Q  95 cctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtattggttcagg 166  Q
    ||||||| ||||||||| |||||| |||||||  ||||| |||||| | |||||||||||||||||||||||    
T  25168119 cctttattgggatagatttagtttctcttttcataggttttacactatgtgactctgttgtattggttcagg 25168190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 2606728 - 2606643
Alignment:
Q  81 tccttaggatctttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtattggttcagg 166  Q
    |||||||||| || ||||| |  ||||||||| ||||| |||||||  ||||| | |||||| |||||||| ||||||||||||||    
T  2606728 tccttaggatattccctttcttaggatagatccagtttctcttttcataggtttttcactttgtgactctgatgtattggttcagg 2606643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 4263237 - 4263145
Alignment:
Q  70 agccacctctctccttaggatctttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtattggtt 162  Q
    |||||||||| ||||||||| ||||||||  ||||| ||| |||  ||||||||||| || ||| | |||| | ||||| | |||||||||||    
T  4263237 agccacctctttccttaggacctttccttgctaggggtagctctgatttttcttttcacatgttttccactatgtgactttcttgtattggtt 4263145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 3374486 - 3374623
Alignment:
Q  59 atggtggacttagccacctctctccttaggatctttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtatt 158  Q
    |||||||||| |||||||||  |||||||||  |||||||| |||||| |||||| ||||||||||||    ||| | |||| | || || |||||||||    
T  3374486 atggtggactaagccacctccttccttaggacttttcctttttagggagagatctggtttttcttttccttagttctccactatgtgcctttgttgtatt 3374585  T
Q  159 ggttcagg-atctcatgtcttttacattttagtgcttt 195  Q
    |||||||| |||| |||||||||| |||||||||||||    
T  3374586 ggttcaggcatcttatgtcttttatattttagtgcttt 3374623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 39332564 - 39332676
Alignment:
Q  84 ttaggatctttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtattggttcagg-atctcatgtcttttac 182  Q
    |||||||||||||| | ||| ||||||||| | ||||||||||  | ||||| |||| | |||||||||||||||| |||||| ||||| |||||||||     
T  39332564 ttaggatctttcctatctagagatagatctggattttcttttcataagttatccactatatgactctgttgtattgattcaggcatctcctgtcttttat 39332663  T
Q  183 attttagtgcttt 195  Q
    |||||||||||||    
T  39332664 attttagtgcttt 39332676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 195
Target Start/End: Complemental strand, 19394021 - 19393911
Alignment:
Q  84 ttaggatctttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtattggttcag-gatctcatgtcttttac 182  Q
    |||||||||| ||||| ||||||||||||||| || ||||| |  ||||| | |||  | ||||||  ||||||||||||||  ||||| |||||||||     
T  19394021 ttaggatcttccctttctagggatagatctagattctctttccataggttctccacaatgtgactc--ttgtattggttcagacatctcctgtcttttat 19393924  T
Q  183 attttagtgcttt 195  Q
    |||||||||||||    
T  19393923 attttagtgcttt 19393911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 195
Target Start/End: Complemental strand, 41034893 - 41034789
Alignment:
Q  92 tttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtattggttcag-gatctcatgtcttttacattttagt 190  Q
    |||||||| | | ||||||||  ||||||||||||  ||||| | ||| || |||||||| |||||||||||||   |||| ||||||||| ||||||||    
T  41034893 tttcctttcttgtgatagatcgggtttttcttttcataggtttttcacattgtgactctggtgtattggttcagacctctcctgtcttttatattttagt 41034794  T
Q  191 gcttt 195  Q
    |||||    
T  41034793 gcttt 41034789  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 44163597 - 44163534
Alignment:
Q  103 gggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtattggttcagg 166  Q
    ||||||||||  |||| |||||||  ||||| |||||| | |||||||||||||||||||||||    
T  44163597 gggatagatccggtttctcttttcataggttttacactatgtgactctgttgtattggttcagg 44163534  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 33191510 - 33191623
Alignment:
Q  84 ttaggatctttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactc-tgttgtattggttca-ggatctcatgtctttta 181  Q
    |||||||||||||||| ||||||||||||| ||||||||||||  ||||| | | |  | |||||| ||||||||||||||| | ||||| |||||||||    
T  33191510 ttaggatctttcctttctagggatagatctggtttttcttttcttaggttctccgcgatgtgactcttgttgtattggttcatgcatctcttgtctttta 33191609  T
Q  182 cattttagtgcttt 195  Q
     ||||| |||||||    
T  33191610 tattttcgtgcttt 33191623  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 15188265 - 15188317
Alignment:
Q  144 tgactctgttgtattggttcagg-atctcatgtcttttacattttagtgcttt 195  Q
    ||||||||||||||| ||||||| ||||| ||||||||| |||||||||||||    
T  15188265 tgactctgttgtattcgttcaggcatctcttgtcttttatattttagtgcttt 15188317  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 37307038 - 37306954
Alignment:
Q  103 gggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtattggttcaggatctcatgtcttttacatttta 188  Q
    ||||||||||   |||||||||||| || || |||| ||| ||||| ||||||||||||||| | |||| ||||||||| ||||||    
T  37307038 gggatagatccgatttttcttttcgtagattttacattttgtgactttgttgtattggttcaag-tctcttgtcttttatatttta 37306954  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 36868538 - 36868638
Alignment:
Q  92 tttcctttatagggatagatctagtttttcttttcgcaggttatacactttttgactctgttgtattggttcagg-atctcatgtcttttacattttagt 190  Q
    |||||||| | ||||||||||   |||||||||||  ||||  ||||| || ||||| |||||||||||||||||  |||| | ||||||| ||||||||    
T  36868538 tttcctttcttgggatagatccgatttttcttttcataggtcttacacattgtgactgtgttgtattggttcaggcctctcctatcttttatattttagt 36868637  T
Q  191 g 191  Q
    |    
T  36868638 g 36868638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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