View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8856_low_4 (Length: 284)
Name: NF8856_low_4
Description: NF8856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8856_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 38581317 - 38581585
Alignment:
| Q |
1 |
attgtgaatttggttgggttgttggtgcagagtgtgttttactatgtttgcaagagttatcatcatcaagagattgataagagtgctttgcatgatcatc |
100 |
Q |
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| T |
38581317 |
attgtgaatttggttgggttgttggtgcagagtgtgttttactatgtttgcaagagttatcatcatcaagagattgataagagtgctttgcatgatcatc |
38581416 |
T |
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| Q |
101 |
ttggtggctaccttggagaatatgtgcctcttaagagcagcattcaaatggaaaatttggatatatgattgtgggatgagacaattaacccaagtgggtt |
200 |
Q |
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| T |
38581417 |
ttggtggctaccttggagaatatgtgcctcttaagagcagcattcaaatggaaaatttggatatatgattgtgggatgagacaattaacccaagtgggtt |
38581516 |
T |
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| Q |
201 |
tgatttgtaagtttatttttcttacttatgatgatgtaatgaaattgtgtaaaatggtcgggaatgaaa |
269 |
Q |
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| T |
38581517 |
tgatttgtaagtttatttttcttacttatgatgatgtaatgaaattgtgtaaaatggtcgggaatgaaa |
38581585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 6884137 - 6884404
Alignment:
| Q |
1 |
attgtgaatttggttgggttgttggtgcagagtgtgttttactatgtttgcaagagttatcatcatcaagagattgataagagtgctttgcatgatcatc |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||| |
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| T |
6884137 |
attgtgaacttggttgggttgttggtgcagagtgtgttttactatgtttgcaagagttatcatcatcaagggattgataagagtgctttacacgatcatc |
6884236 |
T |
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| Q |
101 |
ttggtggctaccttggagaatatgtgcctcttaagagcagcattcaaatggaaaatttggatatatgattgtgggatgagacaattaacccaagtgggtt |
200 |
Q |
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| T |
6884237 |
ttggtggctaccttggagaatatgtgcctcttaagagcagtattcaaatggaaaatttggatgtatgattctgggatgagac-ggtaacccaagtgggtt |
6884335 |
T |
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| Q |
201 |
tgatttgtaagtttatttttcttacttatgatgatgtaatgaaattgtgtaaaatggtcgggaatgaaa |
269 |
Q |
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| T |
6884336 |
tgatttgtaagtttatttttcttacttatgatcatgtaatgaaattgtgtaaaacggtcgggaatgaaa |
6884404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4098661 - 4098728
Alignment:
| Q |
1 |
attgtgaatttggttgggttgttggtgcagagtgtgttttactatgtttgcaagagttatcatcatca |
68 |
Q |
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| T |
4098661 |
attgtgaatttggttgtcatgttggtgtcgagtgagttttactatgtttgtaagagttatcatcatca |
4098728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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