View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8856_low_5 (Length: 282)
Name: NF8856_low_5
Description: NF8856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8856_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 45383285 - 45383550
Alignment:
| Q |
1 |
tcggttgatgaaacgcaactgaggacgatggctgagctctttggcaggggtgttgtatatgcaaacactaaacgctcaagtcagtttttgagtgcggtgc |
100 |
Q |
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| T |
45383285 |
tcggttgatgaaacgcaactgaggacgatggctgagctctttggcaggggtgttgtatatgcaaacactaa-cgctcaagtcagtttttgagtgcggtgc |
45383383 |
T |
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| Q |
101 |
atgagacgtttaacataatggaatgtgtatgtttatcctagctgaggtgtccttttataggtagagtttcaagagaattgagcaaaatttcgttgaggcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45383384 |
atgagacgtttaacataatggaatgtgtatgtttatcctagctgaggtgtccttttataggtagagtttcaagagaattgagcaaaaattcgttgaggcc |
45383483 |
T |
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| Q |
201 |
gttgagagattctctgcatggttcgcggaacaacatcttatgttgattatgtgtgtgctgattgatt |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45383484 |
gttgagagattctctgcatggttcgcggaacaacatcttatgttgattatgtgcgtgctgattgatt |
45383550 |
T |
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