View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8857_high_2 (Length: 545)
Name: NF8857_high_2
Description: NF8857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8857_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 4 - 530
Target Start/End: Original strand, 8348596 - 8349122
Alignment:
| Q |
4 |
atgaggaggacgatgccacggtggactgtcatgggtatggtgctgttttgaggcagcctgcattcgcttagcaaataattccctctgtaaataatttctt |
103 |
Q |
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| T |
8348596 |
atgaggaggacgatgccacggtggactgtcatgggtatggtgctgttttgaggcagcctgcattcgcttagcaaataattccctctgtaaataatttctt |
8348695 |
T |
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| Q |
104 |
tcgacctcttattcttattctcctaaatggtaaagttgcaactcctccaccaactccaaatggtgattgaaagcacacatttttcctcttttgacaaacc |
203 |
Q |
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| T |
8348696 |
tcgacctcttattcttattctcctaaatggtaaagttgcaactcctccaccaactccaaatggtgattgaaagcacacatttttcctcttttgacaaacc |
8348795 |
T |
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| Q |
204 |
gcccagcacgccaaaacttttctggccaattttcccgctctgcatctgaactcgtgtaatttgcggccacgaatttagattgcaccaggtctgcctgctt |
303 |
Q |
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| T |
8348796 |
gcccagcacgccaaaacttttctggccaattttcccgctctgcatctgaactcgtgtaatttgcggccacgaatttagattgcaccaggtctgcctgctt |
8348895 |
T |
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| Q |
304 |
ttattgcagaacatcaacacatgttccgccctctccagatcagccatacaacatggtctgcgggcaattggcgcctacttgaacacttttatcccataat |
403 |
Q |
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| T |
8348896 |
ttattgcagaacatcaacacatgttccgccctctccagatcagccatacaacatggtctgcgggcaattggcgcctacttgaacacttttatcccataat |
8348995 |
T |
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| Q |
404 |
cgtacacgagttggaagacaatttcgttctaatcggaaaaaataatttctttaccttgggaggcacctgcatcttctacatcagctgccaatcgccctca |
503 |
Q |
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| T |
8348996 |
catacacgagttggaagacaatttcgttctaatcggaaaaaataatttctttaccttgggaggcacctgcatcttctacatcagctgccaatcgccctca |
8349095 |
T |
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| Q |
504 |
agttgccgatctgcattatttataatt |
530 |
Q |
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| T |
8349096 |
agttgccgatctgcattatttataatt |
8349122 |
T |
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