View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8857_high_6 (Length: 364)

Name: NF8857_high_6
Description: NF8857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8857_high_6
NF8857_high_6
[»] chr6 (31 HSPs)
chr6 (7-161)||(31290216-31290370)
chr6 (159-343)||(31290408-31290598)
chr6 (107-155)||(26952498-26952546)
chr6 (107-155)||(26961991-26962039)
chr6 (107-155)||(26980289-26980337)
chr6 (268-333)||(2820373-2820438)
chr6 (107-144)||(26649356-26649393)
chr6 (107-144)||(26755324-26755361)
chr6 (159-204)||(27608250-27608295)
chr6 (159-204)||(27715637-27715682)
chr6 (249-321)||(5970098-5970170)
chr6 (249-321)||(15443692-15443764)
chr6 (159-206)||(26058891-26058938)
chr6 (159-206)||(26078861-26078908)
chr6 (248-319)||(32313403-32313474)
chr6 (248-306)||(8931591-8931649)
chr6 (249-307)||(9195744-9195802)
chr6 (249-307)||(9617445-9617503)
chr6 (249-307)||(16766708-16766766)
chr6 (261-310)||(10335378-10335427)
chr6 (249-318)||(25038061-25038130)
chr6 (249-306)||(26562701-26562758)
chr6 (160-193)||(26876539-26876572)
chr6 (265-310)||(29449689-29449734)
chr6 (267-320)||(34625732-34625785)
chr6 (259-319)||(7377978-7378038)
chr6 (255-307)||(9025490-9025542)
chr6 (259-307)||(9629394-9629442)
chr6 (249-321)||(10760832-10760903)
chr6 (259-319)||(20371110-20371170)
chr6 (249-317)||(21395298-21395365)
[»] chr1 (13 HSPs)
chr1 (200-331)||(264591-264724)
chr1 (249-307)||(44482241-44482299)
chr1 (261-321)||(14332406-14332465)
chr1 (271-315)||(23605132-23605176)
chr1 (276-319)||(17080898-17080941)
chr1 (249-319)||(5376490-5376560)
chr1 (255-317)||(6427351-6427413)
chr1 (249-307)||(25361897-25361955)
chr1 (253-307)||(34712377-34712431)
chr1 (266-312)||(43609825-43609871)
chr1 (276-321)||(21057780-21057825)
chr1 (261-305)||(40158412-40158456)
chr1 (259-319)||(41877470-41877530)
[»] scaffold0022 (1 HSPs)
scaffold0022 (255-322)||(99889-99956)
[»] chr5 (14 HSPs)
chr5 (249-307)||(22423802-22423860)
chr5 (254-312)||(4991372-4991429)
chr5 (253-322)||(38749557-38749626)
chr5 (255-298)||(16374338-16374381)
chr5 (249-319)||(3966502-3966572)
chr5 (249-319)||(18592072-18592142)
chr5 (249-307)||(21522761-21522819)
chr5 (249-307)||(21533327-21533385)
chr5 (255-317)||(43208270-43208332)
chr5 (256-317)||(36838544-36838605)
chr5 (253-306)||(41558648-41558701)
chr5 (251-319)||(6035482-6035549)
chr5 (259-307)||(8420038-8420086)
chr5 (249-281)||(37328834-37328866)
[»] chr3 (8 HSPs)
chr3 (205-310)||(45382751-45382858)
chr3 (248-319)||(16192739-16192810)
chr3 (249-317)||(8039825-8039893)
chr3 (271-322)||(19323460-19323511)
chr3 (263-318)||(28576716-28576771)
chr3 (259-321)||(35990525-35990587)
chr3 (253-318)||(3185242-3185306)
chr3 (265-313)||(27097065-27097113)
[»] chr7 (12 HSPs)
chr7 (249-307)||(6028636-6028694)
chr7 (254-307)||(7328686-7328739)
chr7 (246-307)||(7438717-7438778)
chr7 (253-316)||(31808503-31808566)
chr7 (263-310)||(43160492-43160539)
chr7 (253-307)||(17307904-17307958)
chr7 (249-307)||(24339653-24339711)
chr7 (253-318)||(16341496-16341561)
chr7 (250-319)||(32308119-32308188)
chr7 (255-307)||(12843171-12843223)
chr7 (255-307)||(27945052-27945104)
chr7 (250-318)||(38134397-38134465)
[»] chr2 (4 HSPs)
chr2 (261-307)||(44605141-44605187)
chr2 (259-321)||(31026692-31026754)
chr2 (250-318)||(40681982-40682050)
chr2 (250-318)||(44860320-44860388)
[»] scaffold0349 (1 HSPs)
scaffold0349 (159-204)||(16263-16308)
[»] chr8 (11 HSPs)
chr8 (259-318)||(12985392-12985451)
chr8 (249-307)||(22651987-22652045)
chr8 (159-197)||(29270983-29271021)
chr8 (249-307)||(29447100-29447158)
chr8 (256-310)||(31681827-31681881)
chr8 (255-320)||(31548289-31548354)
chr8 (240-307)||(9382983-9383048)
chr8 (255-318)||(13650755-13650819)
chr8 (255-318)||(13709398-13709462)
chr8 (259-307)||(13844596-13844644)
chr8 (202-242)||(31105813-31105853)
[»] chr4 (7 HSPs)
chr4 (248-307)||(24613690-24613749)
chr4 (249-319)||(35723374-35723445)
chr4 (271-322)||(44796974-44797025)
chr4 (294-332)||(18727855-18727893)
chr4 (246-307)||(4383379-4383439)
chr4 (253-318)||(18513235-18513300)
chr4 (259-319)||(8423718-8423778)
[»] scaffold0123 (1 HSPs)
scaffold0123 (250-306)||(44516-44572)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 31290216 - 31290370
Alignment:
Q  7 tagtacaagttatcttagtgtagtactatagagtagtacattctattttactagtacttgtatgctcactatataagctaattttgctcatggtgtaatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290216 tagtacaagttatcttagtgtagtactatagagtagtacattctattttactagtacttgtatgctcactatataagctaattttgctcatggtgtaatt 31290315  T
Q  107 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgatactgaca 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290316 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgatactgaca 31290370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 159 - 343
Target Start/End: Original strand, 31290408 - 31290598
Alignment:
Q  159 acagaaactacatgaggctggaggcacctatattcaattcccaaacacttctcattgaaggcgtgtctggtgtccaacatgtgtgtatttgacaccgaca 258  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290408 acagaaactacatgaggctcgaggcacctgtattcaattcccaaacacttctcattgaaggcgtgtctggtgtccaacatgtgtgtatttgacaccgaca 31290507  T
Q  259 cgacaccgacatatgtaat------tacattcatttatgttattttctcaaattactatcggtgtcgacaaatcaatgtcaatgttaattt 343  Q
     ||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31290508 tgacaccgacatatgtaattacgtatacattcatttatgttattttctcaaattactatcggtgtcgacgaatcaatgtcaatgttaattt 31290598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 26952498 - 26952546
Alignment:
Q  107 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata 155  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  26952498 ttgagtcaggtttgttgttgttttatcttgcaatatatagtatttgata 26952546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 26961991 - 26962039
Alignment:
Q  107 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata 155  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  26961991 ttgagtcaggtttgttgttgttttatcttgcaatatatagtatttgata 26962039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 26980289 - 26980337
Alignment:
Q  107 ttgagtcaggttagttgttgttttatcttgcaatatatagtgtttgata 155  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  26980289 ttgagtcaggtttgttgttgttttattttgcaatatatagtatttgata 26980337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 2820373 - 2820438
Alignment:
Q  268 catatgtaattacattcatttatgttattttctcaaattactatcggtgtcgacaaatcaatgtca 333  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||| ||| |  ||| ||||||||||    
T  2820373 catatgtgattacattcatttattttattttctcaaattattattggtatttacatatcaatgtca 2820438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 26649356 - 26649393
Alignment:
Q  107 ttgagtcaggttagttgttgttttatcttgcaatatat 144  Q
    |||||||||||| |||||||||||||||||||||||||    
T  26649356 ttgagtcaggttcgttgttgttttatcttgcaatatat 26649393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 26755324 - 26755361
Alignment:
Q  107 ttgagtcaggttagttgttgttttatcttgcaatatat 144  Q
    |||||||||||| |||||||||||||||||||||||||    
T  26755324 ttgagtcaggttcgttgttgttttatcttgcaatatat 26755361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 27608295 - 27608250
Alignment:
Q  159 acagaaactacatgaggctggaggcacctatattcaattcccaaac 204  Q
    |||||||||||||||||||||| |||||||| || |||||||||||    
T  27608295 acagaaactacatgaggctggatgcacctattttgaattcccaaac 27608250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 27715682 - 27715637
Alignment:
Q  159 acagaaactacatgaggctggaggcacctatattcaattcccaaac 204  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||    
T  27715682 acagaaactacatcaggctggatgcacctatattaaattcccaaac 27715637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 5970098 - 5970170
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 321  Q
    ||||||||||||||||| |||| |||||||||| | | |||||| ||||| |||||||| || | ||||||||    
T  5970098 gacaccgacacgacacccacatttgtaattacactgaattatgtgattttttcaaattattaactgtgtcgac 5970170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 15443764 - 15443692
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 321  Q
    |||| |||||| ||||| |||||| |||||| ||| | ||||||||||||||||||||| ||| | |||||||    
T  15443764 gacatcgacacaacaccaacatatataattatattgaattatgttattttctcaaattattattgatgtcgac 15443692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 26058891 - 26058938
Alignment:
Q  159 acagaaactacatgaggctggaggcacctatattcaattcccaaacac 206  Q
    |||||||||||||||| ||||| ||||| |||||| ||||||||||||    
T  26058891 acagaaactacatgagtctggatgcacccatattctattcccaaacac 26058938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 26078861 - 26078908
Alignment:
Q  159 acagaaactacatgaggctggaggcacctatattcaattcccaaacac 206  Q
    |||||||||||||||| ||||| ||||| |||||| ||||||||||||    
T  26078861 acagaaactacatgagtctggatgcacccatattctattcccaaacac 26078908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 32313474 - 32313403
Alignment:
Q  248 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 319  Q
    |||||||||||||||||| ||| || ||||| |||| | | ||||||||||||||| ||| ||| |||||||    
T  32313474 tgacaccgacacgacacccacacatataattgcattgaatcatgttattttctcaacttattattggtgtcg 32313403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 8931591 - 8931649
Alignment:
Q  248 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 306  Q
    |||||||||||||||| ||||| || |||||| | | | ||||||||||||||||||||    
T  8931591 tgacaccgacacgacatcgacacatataattatactgaattatgttattttctcaaatt 8931649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 9195744 - 9195802
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    |||||| |||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  9195744 gacacctacacgacaccgacacatataattacactaaattatgtcattttctcaaatta 9195802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 9617503 - 9617445
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    |||||||  |||||||||||| || |||||||||| | |||||| ||||||||||||||    
T  9617503 gacaccgcgacgacaccgacacatataattacattgaattatgtgattttctcaaatta 9617445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 16766766 - 16766708
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    |||||||||||||||||||||  |||||||||| | | |||||| ||||| ||||||||    
T  16766766 gacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaatta 16766708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 10335378 - 10335427
Alignment:
Q  261 acaccgacatatgtaattacattcatttatgttattttctcaaattacta 310  Q
    ||||||||| || | |||||||||| |||||| |||||||||||||||||    
T  10335378 acaccgacacatctgattacattcaattatgtcattttctcaaattacta 10335427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 25038061 - 25038130
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 318  Q
    |||||| |||| | |||||||| |||||||||| | | |||||| |||||||||||||| || |||||||    
T  25038061 gacaccaacacaataccgacatttgtaattacactaaattatgtaattttctcaaattattaacggtgtc 25038130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 26562758 - 26562701
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 306  Q
    ||||||||||||||| ||||| || |||||||| | | |||||| |||||||||||||    
T  26562758 gacaccgacacgacatcgacacatataattacactgaattatgtgattttctcaaatt 26562701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 26876539 - 26876572
Alignment:
Q  160 cagaaactacatgaggctggaggcacctatattc 193  Q
    ||||||||||||||||||||| ||||||||||||    
T  26876539 cagaaactacatgaggctggatgcacctatattc 26876572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 29449734 - 29449689
Alignment:
Q  265 cgacatatgtaattacattcatttatgttattttctcaaattacta 310  Q
    ||||| |||| |||||||||| |||||||||||||| |||||||||    
T  29449734 cgacacatgtgattacattcaattatgttattttctgaaattacta 29449689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 34625785 - 34625732
Alignment:
Q  267 acatatgtaattacattcatttatgttattttctcaaattactatcggtgtcga 320  Q
    |||||||| |||||||||| |||  | |||||||||||||| ||||||||||||    
T  34625785 acatatgtgattacattcaattaattcattttctcaaattattatcggtgtcga 34625732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 7378038 - 7377978
Alignment:
Q  259 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 319  Q
    ||||||||||| || |||||||||| | |||||| |||||||||||||  || ||||||||    
T  7378038 cgacaccgacacatataattacattgaattatgtgattttctcaaatttttagcggtgtcg 7377978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 9025490 - 9025542
Alignment:
Q  255 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    ||||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  9025490 gacacgacaccgacacatataattacactgaattatgtgattttctcaaatta 9025542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 9629442 - 9629394
Alignment:
Q  259 cgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    ||||||||||| || |||||||||| | |||||| ||||||||||||||    
T  9629442 cgacaccgacacatataattacattgaattatgtgattttctcaaatta 9629394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 10760832 - 10760903
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 321  Q
    |||||| |||||||| |||||  ||| |||||||||| | |||| |||||||||||||| |||| ||||||||    
T  10760832 gacaccaacacgacatcgacacgtgtgattacattcaat-atgtcattttctcaaattattatcagtgtcgac 10760903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 20371110 - 20371170
Alignment:
Q  259 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 319  Q
    ||||||||||| || |||| ||||| | |||||| |||||||||||||| || ||||||||    
T  20371110 cgacaccgacacatataatcacattgagttatgtgattttctcaaattattagcggtgtcg 20371170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 317
Target Start/End: Original strand, 21395298 - 21395365
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 317  Q
    ||||| |||||||||||||||  |||||||||| | | ||||| ||||||||||||||| || ||||||    
T  21395298 gacactgacacgacaccgacacttgtaattacactaaattatg-tattttctcaaattattagcggtgt 21395365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 200 - 331
Target Start/End: Complemental strand, 264724 - 264591
Alignment:
Q  200 caaacacttctcattgaaggcgtgtctggtgtccaacatgtgt--gtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattt 297  Q
    |||||||||||||| || |||||||| |||| ||||||| |||  || || ||||| ||||||||||| ||| |||| |||||||| |  ||||||| ||    
T  264724 caaacacttctcatagatggcgtgtcaggtgcccaacatatgtttgtgttcgacactgacacgacaccaacacatgtgattacatttaagtatgttactt 264625  T
Q  298 tctcaaattactatcggtgtcgacaaatcaatgt 331  Q
    ||| |||||| ||| |||| ||||||||||||||    
T  264624 tcttaaattaatattggtgacgacaaatcaatgt 264591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 44482299 - 44482241
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    ||||||||||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  44482299 gacaccgacacgacaccgacacatataattacactgaattatgtgattttctcaaatta 44482241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 14332465 - 14332406
Alignment:
Q  261 acaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 321  Q
    |||||||||||||| |||||||| | |||||| |||||||||||||  |||||||||||||    
T  14332465 acaccgacatatgtgattacattgaattatgtcattttctcaaatt-ttatcggtgtcgac 14332406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 23605132 - 23605176
Alignment:
Q  271 atgtaattacattcatttatgttattttctcaaattactatcggt 315  Q
    |||| |||||||||| || ||||||||||||||||||||||||||    
T  23605132 atgtgattacattcaattttgttattttctcaaattactatcggt 23605176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 319
Target Start/End: Original strand, 17080898 - 17080941
Alignment:
Q  276 attacattcatttatgttattttctcaaattactatcggtgtcg 319  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||    
T  17080898 attacattcaattatgttattttctcaaattattattggtgtcg 17080941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 5376490 - 5376560
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 319  Q
    |||| ||||||||||||||||  | |||||||| | | |||||||||||||| |||||| || ||||||||    
T  5376490 gacatcgacacgacaccgacacttttaattacactgaattatgttattttcttaaattattagcggtgtcg 5376560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 6427413 - 6427351
Alignment:
Q  255 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 317  Q
    ||||||||||| ||| || |||||||||| | |||||| |||||||||||||| || ||||||    
T  6427413 gacacgacaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgt 6427351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 25361955 - 25361897
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    |||||||||||||||| |||| || |||||||| | | |||||| ||||||||||||||    
T  25361955 gacaccgacacgacactgacacatataattacactgaattatgtgattttctcaaatta 25361897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 34712377 - 34712431
Alignment:
Q  253 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    |||||||||||| |||| || |||||||| | | |||||||||||||||||||||    
T  34712377 ccgacacgacactgacacatataattacactaaattatgttattttctcaaatta 34712431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 43609825 - 43609871
Alignment:
Q  266 gacatatgtaattacattcatttatgttattttctcaaattactatc 312  Q
    |||| |||| |||||||||| ||||||||||||||||||||| ||||    
T  43609825 gacacatgtgattacattcaattatgttattttctcaaattattatc 43609871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 21057825 - 21057780
Alignment:
Q  276 attacattcatttatgttattttctcaaattactatcggtgtcgac 321  Q
    |||||||||| |||||||||||||| |||||| || ||||||||||    
T  21057825 attacattcaattatgttattttctaaaattattagcggtgtcgac 21057780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 40158412 - 40158456
Alignment:
Q  261 acaccgacatatgtaattacattcatttatgttattttctcaaat 305  Q
    ||||||||| |||| ||| ||||||||||||| ||||||||||||    
T  40158412 acaccgacacatgtgatttcattcatttatgtcattttctcaaat 40158456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 41877470 - 41877530
Alignment:
Q  259 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 319  Q
    |||||||||||  |||||||||| | | |||||| |||||||||||||| || ||||||||    
T  41877470 cgacaccgacacttgtaattacactaaattatgtaattttctcaaattattagcggtgtcg 41877530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 99956 - 99889
Alignment:
Q  255 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 322  Q
    ||||||||||| ||| || |||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  99956 gacacgacaccaacacatataattacattgaattatgttattttctaaaattattatcggtgtcgaca 99889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 22423802 - 22423860
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    |||||||||||||||||||||||| |||||| ||| | |||||| ||||||||||||||    
T  22423802 gacaccgacacgacaccgacatatataattatattgaattatgtgattttctcaaatta 22423860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 4991372 - 4991429
Alignment:
Q  254 cgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatc 312  Q
    |||||||||||||||| || |||||||||  |||||||| |||||||||||||||||||    
T  4991372 cgacacgacaccgacacatctaattacatg-atttatgtcattttctcaaattactatc 4991429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 38749557 - 38749626
Alignment:
Q  253 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 322  Q
    ||||||| ||||| ||| || |||||||||| | |||||| ||||| |||||||| ||||||||||||||    
T  38749557 ccgacacaacaccaacacatataattacattgaattatgtcattttttcaaattattatcggtgtcgaca 38749626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 16374338 - 16374381
Alignment:
Q  255 gacacgacaccgacatatgtaattacattcatttatgttatttt 298  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||    
T  16374338 gacacgacaccgacacatgtaattacactgatttatgttatttt 16374381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 3966572 - 3966502
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 319  Q
    ||||| ||||||||||||||| || |||||||| | | || ||| |||||||||||||| || ||||||||    
T  3966572 gacactgacacgacaccgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtcg 3966502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 18592142 - 18592072
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 319  Q
    |||||||||||||||||| || || |||||||||| | |||||| ||||||| ||| || || ||||||||    
T  18592142 gacaccgacacgacaccggcacatataattacattgaattatgtaattttcttaaaatattagcggtgtcg 18592072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 21522819 - 21522761
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    |||||||||||||||||||||  |||||||||| | | |||||||||||| | ||||||    
T  21522819 gacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaatta 21522761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 21533385 - 21533327
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    |||||||||||||||||||||  |||||||||| | | |||||||||||| | ||||||    
T  21533385 gacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaatta 21533327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 43208270 - 43208332
Alignment:
Q  255 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 317  Q
    ||||| |||| |||| || | |||||||| | |||||| ||||||||||||||||||||||||    
T  43208270 gacacaacacagacagatatgattacattgaattatgtcattttctcaaattactatcggtgt 43208332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 36838605 - 36838544
Alignment:
Q  256 acacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 317  Q
    |||||||||||||| || |||||||| | | |||||| |||||||||||||| || ||||||    
T  36838605 acacgacaccgacacatataattacactaaattatgtaattttctcaaattattagcggtgt 36838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 41558648 - 41558701
Alignment:
Q  253 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 306  Q
    |||||||||||| |||| || |||||||||| | |||||| |||||||||||||    
T  41558648 ccgacacgacactgacacatttaattacattgaattatgtcattttctcaaatt 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 6035549 - 6035482
Alignment:
Q  251 caccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 319  Q
    ||||||||||||||||||| || |||||||| | | |||| ||| |||||||||||| || ||||||||    
T  6035549 caccgacacgacaccgacaaatataattacactgaattatatta-tttctcaaattattagcggtgtcg 6035482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 8420086 - 8420038
Alignment:
Q  259 cgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    |||||||||||  |||||||||||| | |||||||||||| ||||||||    
T  8420086 cgacaccgacacttgtaattacattgaattatgttattttttcaaatta 8420038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 37328834 - 37328866
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattaca 281  Q
    ||||||||||||||||||||| |||||||||||    
T  37328834 gacaccgacacgacaccgacacatgtaattaca 37328866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 310
Target Start/End: Complemental strand, 45382858 - 45382751
Alignment:
Q  205 acttctcattgaaggcgtgtctggtgtccaacatgtgt--gtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctca 302  Q
    |||||| || |||||| |||| ||||||| |||| |||  || | ||||||| ||| | ||||||||||||| ||||||||||  ||||||||||||| |    
T  45382858 acttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacaccaacatgtcaccgacatatgtgattacattcaaatatgttattttctta 45382759  T
Q  303 aattacta 310  Q
    ||||||||    
T  45382758 aattacta 45382751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 319
Target Start/End: Original strand, 16192739 - 16192810
Alignment:
Q  248 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 319  Q
    |||||||||||||||| | ||| || |||||||| | | ||||||||||||||||||||| || ||||||||    
T  16192739 tgacaccgacacgacatcaacacatataattacactgaattatgttattttctcaaattattaacggtgtcg 16192810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 317
Target Start/End: Original strand, 8039825 - 8039893
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 317  Q
    ||||||||||||||||||||| || |||||||| | | |||| | |||||||||||||| || ||||||    
T  8039825 gacaccgacacgacaccgacacatataattacactgaattatataattttctcaaattattagcggtgt 8039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 19323460 - 19323511
Alignment:
Q  271 atgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 322  Q
    |||| |||| ||||| |||||| ||||||||||||||||||| |||||||||    
T  19323460 atgtgattaaattcaattatgtcattttctcaaattactatcagtgtcgaca 19323511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 28576771 - 28576716
Alignment:
Q  263 accgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 318  Q
    ||||||| ||||||||||||||| || ||| |||||||||||||| || |||||||    
T  28576771 accgacacatgtaattacattcaattttgtcattttctcaaattattaccggtgtc 28576716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 35990525 - 35990587
Alignment:
Q  259 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 321  Q
    |||||| |||| ||||  ||||||||| |||| |||||||||||||||| |||| ||||||||    
T  35990525 cgacactgacacatgtggttacattcagttattttattttctcaaattattatcagtgtcgac 35990587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 3185242 - 3185306
Alignment:
Q  253 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 318  Q
    |||||||||||| |||| ||||||||||||||| ||||| ||| |||| |||||| ||||| ||||    
T  3185242 ccgacacgacactgacacatgtaattacattcaattatg-tatcttctgaaattattatcgatgtc 3185306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 27097065 - 27097113
Alignment:
Q  265 cgacatatgtaattacattcatttatgttattttctcaaattactatcg 313  Q
    |||||||| |||||| ||| | |||||| ||||||||||||||||||||    
T  27097065 cgacatatataattaaattgaattatgtaattttctcaaattactatcg 27097113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 6028694 - 6028636
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    ||||| |||||||||||||||| |||||||||||| | ||||||||| || ||||||||    
T  6028694 gacactgacacgacaccgacatttgtaattacattaaattatgttatattttcaaatta 6028636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 7328686 - 7328739
Alignment:
Q  254 cgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    |||||||||||||||| || |||||||| | | |||||||||||||||||||||    
T  7328686 cgacacgacaccgacacatataattacactaaattatgttattttctcaaatta 7328739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 7438778 - 7438717
Alignment:
Q  246 tttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    ||||||||||||| ||||||||||  |||||||||||| | |||||| ||||| ||||||||    
T  7438778 tttgacaccgacatgacaccgacacttgtaattacattgaattatgtgattttttcaaatta 7438717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 31808503 - 31808566
Alignment:
Q  253 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtg 316  Q
    ||||||||||||| ||| |||| |||||||| | || ||| |||||||||||||| ||||||||    
T  31808503 ccgacacgacaccaacacatgtgattacattgacttgtgtcattttctcaaattattatcggtg 31808566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 43160539 - 43160492
Alignment:
Q  263 accgacatatgtaattacattcatttatgttattttctcaaattacta 310  Q
    ||||||| |||| |||||||||| |||||||||||||| |||||||||    
T  43160539 accgacacatgtgattacattcaattatgttattttcttaaattacta 43160492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 17307958 - 17307904
Alignment:
Q  253 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    ||||||||||||| ||| || |||||||| | | |||||||||||||||||||||    
T  17307958 ccgacacgacaccaacacatataattacactgaattatgttattttctcaaatta 17307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 24339711 - 24339653
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    |||||||||||||||||||||  |||||||||| | | |||||| ||||| ||||||||    
T  24339711 gacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaatta 24339653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 16341561 - 16341496
Alignment:
Q  253 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 318  Q
    |||||||||||||| || || |||||||| | | |||||| |||||||||||||| |||| |||||    
T  16341561 ccgacacgacaccggcacatataattacacttaattatgtgattttctcaaattattatcagtgtc 16341496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 32308188 - 32308119
Alignment:
Q  250 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 319  Q
    ||||||||||||||| |||| ||  ||||||| | | |||||| |||||||||||||| || ||||||||    
T  32308188 acaccgacacgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtcg 32308119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 12843171 - 12843223
Alignment:
Q  255 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    |||||||||| |||| ||||||||||||| | |||||| ||||| ||||||||    
T  12843171 gacacgacactgacacatgtaattacattgaattatgtaattttatcaaatta 12843223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 27945104 - 27945052
Alignment:
Q  255 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    |||||||||||||||  |||||||||| | | |||||| ||||||||||||||    
T  27945104 gacacgacaccgacacttgtaattacactgaattatgtaattttctcaaatta 27945052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 38134397 - 38134465
Alignment:
Q  250 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 318  Q
    ||||| ||| || ||||||| || | |||||||| | |||||| |||||||||||||| ||||||||||    
T  38134397 acacccacatgagaccgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 38134465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 44605141 - 44605187
Alignment:
Q  261 acaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||||    
T  44605141 acaccgacacatgtaattacattgaattatgttattttctcaaatta 44605187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 31026754 - 31026692
Alignment:
Q  259 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 321  Q
    |||||||||||||| | |||||||| | |||||| ||||||| |||||| ||||||| |||||    
T  31026754 cgacaccgacatatatgattacattgaattatgtcattttcttaaattattatcggtctcgac 31026692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 318
Target Start/End: Complemental strand, 40682050 - 40681982
Alignment:
Q  250 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 318  Q
    ||||| ||||||||  ||||  || ||||||||| | |||||| |||||||||||||| ||||||||||    
T  40682050 acaccaacacgacattgacacgtgcaattacattgaattatgtcattttctcaaattattatcggtgtc 40681982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 318
Target Start/End: Complemental strand, 44860388 - 44860320
Alignment:
Q  250 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 318  Q
    ||||| |||||||||||||| || |||||||| | | |||||  |||||||||||||| || |||||||    
T  44860388 acaccaacacgacaccgacacatataattacactgaattatgcgattttctcaaattattagcggtgtc 44860320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 16263 - 16308
Alignment:
Q  159 acagaaactacatgaggctggaggcacctatattcaattcccaaac 204  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||    
T  16263 acagaaactacatcaggctggatgcacctatattaaattcccaaac 16308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 12985451 - 12985392
Alignment:
Q  259 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 318  Q
    |||||||||||||| | |||||||| | |||||| |||||||||||||| ||| ||||||    
T  12985451 cgacaccgacatatatgattacattgaattatgtgattttctcaaattattataggtgtc 12985392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 22652045 - 22651987
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    |||||||||||||||||||||  |||||||| ||| | |||||| ||||| ||||||||    
T  22652045 gacaccgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaatta 22651987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 29271021 - 29270983
Alignment:
Q  159 acagaaactacatgaggctggaggcacctatattcaatt 197  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  29271021 acagaaactacatgagactggatgcacctatattcaatt 29270983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 29447100 - 29447158
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    |||||||||| ||||||||||  |||| ||||||| | |||||| ||||||||||||||    
T  29447100 gacaccgacatgacaccgacacttgtagttacattgaattatgtgattttctcaaatta 29447158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 31681827 - 31681881
Alignment:
Q  256 acacgacaccgacatatgtaattacattcatttatgttattttctcaaattacta 310  Q
    |||||||||||||| |||| ||| |||||| |||||| ||||||| |||||||||    
T  31681827 acacgacaccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 31548289 - 31548354
Alignment:
Q  255 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcga 320  Q
    |||| |||||||||| |||| |||||||| | |||||| ||||| |||||| | ||||||||||||    
T  31548289 gacatgacaccgacacatgtgattacattgaattatgtcattttatcaaataattatcggtgtcga 31548354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 9383048 - 9382983
Alignment:
Q  240 tgtgtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    ||||| ||||||||||||||||||| |||| |  |||||||||| | ||||||  |||||||||||||    
T  9383048 tgtgtgtttgacaccgacacgacacagacaca--taattacattgaattatgtagttttctcaaatta 9382983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 13650819 - 13650755
Alignment:
Q  255 gacacgacaccgacatatgtaattacattcatttatgt-tattttctcaaattactatcggtgtc 318  Q
    |||||||||||| || ||||| ||||||||||| |  | ||||||||||| ||||||||||||||    
T  13650819 gacacgacaccgtcacatgtagttacattcattaacttctattttctcaacttactatcggtgtc 13650755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 13709462 - 13709398
Alignment:
Q  255 gacacgacaccgacatatgtaattacattcatttatgt-tattttctcaaattactatcggtgtc 318  Q
    |||||||||||| || ||||| ||||||||||| |  | ||||||||||| ||||||||||||||    
T  13709462 gacacgacaccgtcacatgtagttacattcattaacttctattttctcaacttactatcggtgtc 13709398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 13844596 - 13844644
Alignment:
Q  259 cgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    ||||||||||| || |||||||| ||| |||||| ||||||||||||||    
T  13844596 cgacaccgacacatataattacactcaattatgtgattttctcaaatta 13844644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 31105813 - 31105853
Alignment:
Q  202 aacacttctcattgaaggcgtgtctggtgtccaacatgtgt 242  Q
    |||||||| ||||||||  ||||||||||||||||||||||    
T  31105813 aacacttcacattgaagatgtgtctggtgtccaacatgtgt 31105853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 24613690 - 24613749
Alignment:
Q  248 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    ||||||||||| ||||||||||  |||| ||||||| | |||||| ||||||||||||||    
T  24613690 tgacaccgacatgacaccgacacttgtacttacattgaattatgtgattttctcaaatta 24613749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 35723374 - 35723445
Alignment:
Q  249 gacaccgacacgacaccgacatatgtaattacattcatttatgt-tattttctcaaattactatcggtgtcg 319  Q
    |||||||| ||||||| |||| || |||||||||| | |||||| ||||||||||||||| || ||||||||    
T  35723374 gacaccgatacgacactgacacatataattacattgaattatgtgtattttctcaaattattagcggtgtcg 35723445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 44796974 - 44797025
Alignment:
Q  271 atgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 322  Q
    ||||||||||||| | ||||||||||||||||||||| | ||||||| ||||    
T  44796974 atgtaattacattgaattatgttattttctcaaattattgtcggtgttgaca 44797025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Complemental strand, 18727893 - 18727855
Alignment:
Q  294 attttctcaaattactatcggtgtcgacaaatcaatgtc 332  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  18727893 attttctcaaattactattggtgttgacaaatcaatgtc 18727855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 4383439 - 4383379
Alignment:
Q  246 tttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 307  Q
    ||||||||||||||||||| ||||| |||||||||| | | |||||| ||||| ||||||||    
T  4383439 tttgacaccgacacgacactgacatttgtaattacactgaattatgtgatttt-tcaaatta 4383379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 18513235 - 18513300
Alignment:
Q  253 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 318  Q
    ||||||| |||| |||| || | |||||||| | |||||| |||||||||||||| ||||||||||    
T  18513235 ccgacacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 8423718 - 8423778
Alignment:
Q  259 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 319  Q
    |||||||||||| | |||||||| | | |||||| |||||||||||||| || ||||||||    
T  8423718 cgacaccgacatttataattacactgaattatgtgattttctcaaattattagcggtgtcg 8423778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 44516 - 44572
Alignment:
Q  250 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 306  Q
    |||||||||||| ||||||| || |||||||| | | |||||| |||||||||||||    
T  44516 acaccgacacgataccgacacatataattacactgaattatgtgattttctcaaatt 44572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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