View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8857_low_1 (Length: 765)
Name: NF8857_low_1
Description: NF8857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8857_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 24 - 695
Target Start/End: Complemental strand, 4775609 - 4774941
Alignment:
| Q |
24 |
atcacttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataa |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775609 |
atcacttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataa |
4775510 |
T |
|
| Q |
124 |
tggttgtaataatatctgtaaatggaaatcatatcccatagtaaatagccaattagtatagttgactgttccatgattttagcataattcatcattgtat |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775509 |
tggttgtaataatatctgtaaatggaaatcatatcccatagta---------------tagttgactgttccatgattttagcataattcatcattgtat |
4775425 |
T |
|
| Q |
224 |
tatatgtatatatggccacacaaatgttaacatt---ttctattgacttgaatataacagaacgtat---------acattgcaggtggctacagaggat |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
4775424 |
tatatgtatatatggccacacaaatgttaacattattttctattgacttgaatataacagaacgtatttatcctatacatcgcaggtggctacagaggat |
4775325 |
T |
|
| Q |
312 |
agatggatttggcatttacccacatctcatagttacatagttaacaatgcttgtaataaagtaacaaaggtgtttcagaactctactcctcatgttcttt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775324 |
agatggatttggcatttacccacatctcatagttacatagttaacaatgcttgtaataaagtaacaaaggtgtttcagaactctactcctcatgttcttt |
4775225 |
T |
|
| Q |
412 |
ggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggagggtcttggt |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |
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| T |
4775224 |
ggcttaaagtagtacttctcaaagtctcaatttttgctttacgtttgagtttgaatcatgttcctgctagagacaatttatttaaaaggagggtcttagt |
4775125 |
T |
|
| Q |
512 |
gctgtttgtttttctgtttttgtagtgaacttgaccagttgcatgtttctgtaatcttgatgggttggtttcgtacacctatgctgagacagttgatcct |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4775124 |
gctgtttgtttttctgtttttgtagtgaacttgaccagttgcatgtttctctaatcttgatgggttggtttcgtacacctatgctgaaacagttgatcct |
4775025 |
T |
|
| Q |
612 |
gatttgttaatatatcannnnnnnagccttttaagaaaatcagtcattgctaaattagtgtttatttaaggtattaaccccaaa |
695 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4775024 |
gatttgttaatataccatttttttagccttttaagaaaatcagtcattgctaaattagtgtttatttaagatattaaccccaaa |
4774941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 306 - 508
Target Start/End: Complemental strand, 29553195 - 29552984
Alignment:
| Q |
306 |
gaggatagatggatttggcatttacccacatctcatagttacatagttaacaatgcttgtaataaagtaacaaaggtgtttcagaactctactcctcat- |
404 |
Q |
| |
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||||||||||||||||||||||||| | | ||||| ||||||| ||||| |||||| | ||||||| | | ||| || |||||||| |||||||| |
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| T |
29553195 |
gaggatagatggatttggcatttacactcttctcagagttacacagttagcaatgcgtataataaattgatggagggtttgcagaactccactcctcaga |
29553096 |
T |
|
| Q |
405 |
--------gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataa |
496 |
Q |
| |
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||||||||||||||| | || | |||||||||||| ||||||||||| |||||| || |||||| | ||||| || | ||||||||| ||| |
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| T |
29553095 |
attctcaggttctttggcttaaaatggttcctctcaaagtctctatttttgcttggcgattgggtctgaatcgtattcctactaaaaacaatttatttaa |
29552996 |
T |
|
| Q |
497 |
aaggagggtctt |
508 |
Q |
| |
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|||||||||||| |
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| T |
29552995 |
aaggagggtctt |
29552984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 82 - 250
Target Start/End: Complemental strand, 448677 - 448506
Alignment:
| Q |
82 |
tgtaggagtattaacttaa---gcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcatatcccatagtaaatagccaatta |
178 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||||| ||||||| |||||||||| |
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| T |
448677 |
tgtaggagtattaacttaattagcattgaccaaatcaaataatgatgggtgtaataatatcagtaaatggaaatcatatcttatagtaactagccaatta |
448578 |
T |
|
| Q |
179 |
gtatagttgactgttccatgattttagcataattcatcattgtattatatgtatatatggccacacaaatgt |
250 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |||||||||| |
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| T |
448577 |
gtatagttgactgttccatgatttgagcaatattcatcattgtattccatgtatatatggctacacaaatgt |
448506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 405 - 505
Target Start/End: Original strand, 38397707 - 38397807
Alignment:
| Q |
405 |
gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggaggg |
504 |
Q |
| |
|
||||||||||||||||| || ||||||||| |||||||| ||||| || ||| ||||||||| | ||||| | ||||||||||| ||||||||||| |
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| T |
38397707 |
gttctttggcttaaagtggtttctctcaaagtatcaattttcgcttggcgtttgggtttgaatcgtattcctacaaaagacaatttatttaaaaggaggg |
38397806 |
T |
|
| Q |
505 |
t |
505 |
Q |
| |
|
| |
|
|
| T |
38397807 |
t |
38397807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 43060967 - 43060836
Alignment:
| Q |
24 |
atcacttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| || || |
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| T |
43060967 |
atcacttccttaaagacaagattggagttattgatgatacctccatcttgagcgggcgtgtaggagtattaacttaagcatttaccaaatcaaataacaa |
43060868 |
T |
|
| Q |
124 |
tggttgtaataatatctgtaaatggaaatcat |
155 |
Q |
| |
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|||||||||| ||||| ||||||||||||||| |
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| T |
43060867 |
tggttgtaatgatatcagtaaatggaaatcat |
43060836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 405 - 505
Target Start/End: Original strand, 17173614 - 17173714
Alignment:
| Q |
405 |
gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggaggg |
504 |
Q |
| |
|
||||||||||||||||| || | ||||||||| ||||| |||||||| || ||| ||||||||| | ||||| | ||||||||||| ||||||||||| |
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| T |
17173614 |
gttctttggcttaaagtggttcatctcaaagtatcaatatttgcttggcgtttgggtttgaatcgtattcctacaaaagacaatttatttaaaaggaggg |
17173713 |
T |
|
| Q |
505 |
t |
505 |
Q |
| |
|
| |
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|
| T |
17173714 |
t |
17173714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 43060807 - 43060749
Alignment:
| Q |
224 |
tatatgtatatatggccacacaaatgttaacattttctattgacttgaatataacagaa |
282 |
Q |
| |
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||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
43060807 |
tatatatatatattaccacacaaatgttaatattttctattgacttgaatacaacagaa |
43060749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 42019520 - 42019449
Alignment:
| Q |
29 |
ttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaa |
100 |
Q |
| |
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|||||||||||||||||||||||| |||| |||| |||| | || |||||| || ||||||||| |||||| |
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| T |
42019520 |
ttccttaaagacaagattggagttcttgaagataactccattttcagggggagtaaaggagtatttacttaa |
42019449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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