View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8857_low_13 (Length: 224)
Name: NF8857_low_13
Description: NF8857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8857_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 29377295 - 29377480
Alignment:
| Q |
20 |
atgaaaactgaagaatgttacgggcgaaatgaatcacttgtagaagttgaagctagggttctagggaatgaagtgttaatcaagattcattgtggcatgc |
119 |
Q |
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| T |
29377295 |
atgaaaactgaagaatgttacgggcgaaatgaatcacttgtagaggttgaagctagggttctagggaatgaagtgttaatcaagattcattgtggcatgc |
29377394 |
T |
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| Q |
120 |
aagaggggattgtggtcaatataatgtcccaacttcaacttcttcatctctccataacaactaccaatgtcttgccatttggaaat |
205 |
Q |
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| T |
29377395 |
aagaggggattgtggtcaatataatgtcccagcttcagcttcttcatctctccgtaacaactaccaatgtcttgccatttggaaat |
29377480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 45039537 - 45039727
Alignment:
| Q |
15 |
gtgagatgaaaactgaagaatgttacgggcgaaatgaatcacttgtagaagttgaagctagggttctagggaatgaagtgttaatcaagattcattgtgg |
114 |
Q |
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| T |
45039537 |
gtgaaatgaacactgaagaatgttacgggagaaatgaatcacttctagaggttgaagctaggattctagagaaggaagttttaatcaagatttattgtgg |
45039636 |
T |
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| Q |
115 |
catgcaagaggggattgtggtcaatataatgtcccaacttcaacttcttcatctctccataacaactaccaatgtcttgccatttggaaat |
205 |
Q |
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| T |
45039637 |
aatgcaagaagggattgtggtcaatataatgtcccagcttcaacttcttcatctgtccataacaagtatcaatgtcttgccatttggaaat |
45039727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 45082994 - 45082863
Alignment:
| Q |
74 |
agggttctagggaatgaagtgttaatcaagattcattgtggcatgcaagaggggattgtggtcaatataatgtcccaacttcaacttcttcatctctcca |
173 |
Q |
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| T |
45082994 |
agggttctagggaaggaagtgttaatcaagattcgctgtgggaagtaaaaggagattctggtcaatataattttgcagcttcaaattcttcatctctcca |
45082895 |
T |
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| Q |
174 |
taacaactaccaatgtcttgccatttggaaat |
205 |
Q |
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| T |
45082894 |
taacaactaccaatgtcttgccatttggaaat |
45082863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 45065449 - 45065540
Alignment:
| Q |
15 |
gtgagatgaaaactgaagaatgttacgggcgaaatgaatcacttgtagaagttgaagctagggttctagggaatgaagtgttaatcaagatt |
106 |
Q |
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| T |
45065449 |
gtgaaatgaacactgaagaatgttatggccgaaataaatcacttctaaaggttgatgctagagttcttgggaaggaagtgtcaattaagatt |
45065540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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