View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8857_low_4 (Length: 505)
Name: NF8857_low_4
Description: NF8857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8857_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Complemental strand, 35095850 - 35095374
Alignment:
| Q |
18 |
cattcttcatcactttcttcttttctattaatctcatcaacattgcttattgtatttctgacatagattctctccttaaatttaaaaactctcttcaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35095850 |
cattcttcatcactttcttcttttctattaatctcatcaacattgcttattgtatttctgacatagattctctccttaaatttaaaaactctcttcaaaa |
35095751 |
T |
|
| Q |
118 |
caccgacgttgcattatcttcatggaatacatccatgcctccatgtaatgctgataatgcaaattgggcgggcgttctttgttacaaaggacatgtttgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35095750 |
caccgacgttgcattatcttcatggaatacatccatgcctccatgtaatgctgataatgcaaattgggcgggcgttctttgttacaaaggacatgtttgg |
35095651 |
T |
|
| Q |
218 |
ggatttaaactcgaaaacatgaaccttaaaggcaacattgacatcgattccatcaaggatttaccgtatatcagaaccattagcttaatgaacaaccaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35095650 |
ggatttaaactcgaaaacatgaaccttaaaggcaacattgacatcgattccatcaaggatttaccgtatatcagaaccattagcttaatgaacaaccaat |
35095551 |
T |
|
| Q |
318 |
tcgataccacatggccaggcctaaacaaactcaccggtcttaagaacatttacctttctaataataaattctctggcgagattccagcagaggcgtttca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35095550 |
tcgataccacatggccaggcctaaacaaactcaccggtcttaagaacatttacctttctaataataaattctctggcgagattccagcagaggcgtttca |
35095451 |
T |
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| Q |
418 |
agcgatgcagtggctgaagaaaatttatctcgacaataatcagttcactggtcctattccaacttcccttgcttcat |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35095450 |
agcgatgcagtggctgaagaaaatttatctcgacaataatcagttcactggtcctattccaacttcccttgcttcat |
35095374 |
T |
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