View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8857_low_6 (Length: 412)

Name: NF8857_low_6
Description: NF8857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8857_low_6
NF8857_low_6
[»] chr8 (3 HSPs)
chr8 (173-397)||(2504195-2504419)
chr8 (177-235)||(2499249-2499307)
chr8 (196-234)||(1080849-1080887)
[»] chr3 (2 HSPs)
chr3 (173-235)||(13810829-13810891)
chr3 (173-237)||(12215990-12216056)
[»] scaffold0008 (1 HSPs)
scaffold0008 (173-234)||(116311-116372)
[»] chr6 (1 HSPs)
chr6 (173-234)||(22042822-22042883)
[»] chr2 (1 HSPs)
chr2 (173-234)||(44353201-44353262)
[»] chr7 (2 HSPs)
chr7 (173-237)||(9691799-9691863)
chr7 (173-228)||(9806750-9806805)
[»] chr4 (1 HSPs)
chr4 (173-237)||(13558176-13558240)
[»] scaffold0186 (1 HSPs)
scaffold0186 (173-238)||(31296-31361)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 173 - 397
Target Start/End: Original strand, 2504195 - 2504419
Alignment:
Q  173 ttgccatgtcataggtggtatgagggggtgtatggaattgatatgtccatctatctttttcctttaattaaaggatttgaatttagatgcagtctttttt 272  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2504195 ttgccatgtcataggtggtatgagggggtgtatggaattggtatgtccatctatctttttcctttaattaaaggatttgaatttagatgcagtctttttt 2504294  T
Q  273 gacannnnnnnnnnnnnnnnnnnnnnnnngtactagtgagtttgtcctcaaaatgtgaaaattggatctgggatctaccctaggcgtgtgagagtgagta 372  Q
    ||||                         |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2504295 gacagaaaatggaaaagaaaaattgaaaagtactagtgagtttgtcctcaaaatgtgaaaattggatctgggatctagcctaggcgtgtgagagtgagta 2504394  T
Q  373 attgttaatgttccccagttgttgt 397  Q
    ||||||||||||||| |||||||||    
T  2504395 attgttaatgttcccgagttgttgt 2504419  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 2499307 - 2499249
Alignment:
Q  177 catgtcataggtggtatgagggggtgtatggaattgatatgtccatctatctttttcct 235  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  2499307 catgtcataggtggtatgaggaggtgtatggaattggtatgtccatctatctttttcct 2499249  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 1080887 - 1080849
Alignment:
Q  196 gggggtgtatggaattgatatgtccatctatctttttcc 234  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  1080887 gggggtgtatggaattggtatgtccatctatctttttcc 1080849  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 13810891 - 13810829
Alignment:
Q  173 ttgccatgtcataggtggtatgagggggtgtatggaattgatatgtccatctatctttttcct 235  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  13810891 ttgccatgtcataggtggtataagggggtgtatggaattggtatgtccatgtatctttttcct 13810829  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 12215990 - 12216056
Alignment:
Q  173 ttgccatgtcataggtggtatgagggg--gtgtatggaattgatatgtccatctatctttttccttt 237  Q
    ||||||||||||||||| ||| |||||  ||||||||||||| ||||||||| |||||||| |||||    
T  12215990 ttgccatgtcataggtgatataagggggggtgtatggaattggtatgtccatgtatcttttcccttt 12216056  T

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Target: scaffold0008 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 116311 - 116372
Alignment:
Q  173 ttgccatgtcataggtggtatgagggggtgtatggaattgatatgtccatctatctttttcc 234  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||    
T  116311 ttgccatgtcataggtggtataagggggtgtatggaattggtatgtccatgtatctttttcc 116372  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 22042883 - 22042822
Alignment:
Q  173 ttgccatgtcataggtggtatgagggggtgtatggaattgatatgtccatctatctttttcc 234  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||    
T  22042883 ttgccatgtcataggtggtataagggggtgtatggaattggtatgtccatgtatctttttcc 22042822  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 44353262 - 44353201
Alignment:
Q  173 ttgccatgtcataggtggtatgagggggtgtatggaattgatatgtccatctatctttttcc 234  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||    
T  44353262 ttgccatgtcataggtggtataagggggtgtatggaattggtatgtccatgtatctttttcc 44353201  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 9691799 - 9691863
Alignment:
Q  173 ttgccatgtcataggtggtatgagggggtgtatggaattgatatgtccatctatctttttccttt 237  Q
    |||||||||||||| |||||| ||||| |||||||||||| ||||||||| ||||||||||||||    
T  9691799 ttgccatgtcatagatggtataaggggatgtatggaattggtatgtccatgtatctttttccttt 9691863  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 9806750 - 9806805
Alignment:
Q  173 ttgccatgtcataggtggtatgagggggtgtatggaattgatatgtccatctatct 228  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||    
T  9806750 ttgccatgtcataggtggtatgagcgggtgtatggaattggtatgtccatgtatct 9806805  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 13558176 - 13558240
Alignment:
Q  173 ttgccatgtcataggtggtatgagggggtgtatggaattgatatgtccatctatctttttccttt 237  Q
    |||||||||||||| |||||| ||||| |||||||||||| ||||||||| ||||||||||||||    
T  13558176 ttgccatgtcatagatggtataaggggatgtatggaattggtatgtccatgtatctttttccttt 13558240  T

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Target: scaffold0186 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 31296 - 31361
Alignment:
Q  173 ttgccatgtcataggtggtatgagggggtgtatggaattgatatgtccatctatctttttccttta 238  Q
    ||||||||||||||| ||||| | |||||||||| ||||| ||||||||| |||||||||||||||    
T  31296 ttgccatgtcataggcggtataaaggggtgtatgaaattggtatgtccatgtatctttttccttta 31361  T

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