View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8857_low_7 (Length: 394)
Name: NF8857_low_7
Description: NF8857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8857_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 9857836 - 9858172
Alignment:
| Q |
1 |
aatggaacgttggtttggaagaatatgaagatgaagaggaaatggaggttgaagaagtagataatcggttcgttccagcggctaagtcatttattgaggg |
100 |
Q |
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| T |
9857836 |
aatggaacgttggtttggaagaatatgaagatgaagaggaaatggaggttgaagaagtagataatcggttcgttccagcggctaagtcatttattgaggg |
9857935 |
T |
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| Q |
101 |
attgaagatggtagaagttgaagaagtagagaaatgtgctatttgttttgaagattttaatgttggtgttagaataccatgttcacacatgtttcatatg |
200 |
Q |
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| T |
9857936 |
attgaagatggtagaagttgaagaagtagagaaatgtgctatttgttttgaagattttaatgttggtgttagaataccatgttcacacatgtttcatatg |
9858035 |
T |
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| Q |
201 |
acttgtatctctgattggttggtgataggcaattcatgccctttgtgtaggtttcaattgcctacttgatttgtaatgttttattcattctggtttttca |
300 |
Q |
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| T |
9858036 |
acttgtatctgtgattggttggtgataggcaattcatgccctttgtgtaggtttcaattgcctacttgatttgtaatgtttttttcattctggtttttca |
9858135 |
T |
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| Q |
301 |
gaaaaaccacaaaaactacactgttttattaaggttt |
337 |
Q |
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| T |
9858136 |
gaaaaaccacaaaaactacaacgttttattaaggttt |
9858172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9857647 - 9857703
Alignment:
| Q |
1 |
aatggaacgttggtttggaagaatatgaagatgaagaggaaatggaggttgaagaag |
57 |
Q |
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| T |
9857647 |
aatggaacaatggtttggatgaatttgaagatgaagaggaaatggaggttgaagaag |
9857703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 9862916 - 9862967
Alignment:
| Q |
132 |
aaatgtgctatttgttttgaagattttaatgttggtgttagaataccatgtt |
183 |
Q |
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| T |
9862916 |
aaatgtgctatttgttttgaagattttaaagtttgtcttagtatgccatgtt |
9862967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 345 - 375
Target Start/End: Original strand, 9858161 - 9858191
Alignment:
| Q |
345 |
ttattaaggtttatactatgatgttgccata |
375 |
Q |
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| T |
9858161 |
ttattaaggtttatactatgatgttgccata |
9858191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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