View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8857_low_9 (Length: 334)

Name: NF8857_low_9
Description: NF8857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8857_low_9
NF8857_low_9
[»] chr5 (6 HSPs)
chr5 (1-334)||(37704627-37704960)
chr5 (4-192)||(37699152-37699349)
chr5 (4-132)||(37437696-37437823)
chr5 (18-76)||(37698806-37698864)
chr5 (250-292)||(30384256-30384298)
chr5 (251-287)||(1630012-1630048)
[»] chr4 (2 HSPs)
chr4 (4-192)||(16840857-16841060)
chr4 (252-292)||(31095092-31095132)
[»] chr6 (2 HSPs)
chr6 (252-294)||(17411089-17411131)
chr6 (251-294)||(196244-196287)
[»] chr8 (1 HSPs)
chr8 (252-297)||(18080600-18080645)
[»] chr3 (1 HSPs)
chr3 (251-294)||(44291420-44291463)
[»] chr7 (2 HSPs)
chr7 (251-289)||(12422352-12422390)
chr7 (262-294)||(32857805-32857837)


Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 37704627 - 37704960
Alignment:
Q  1 accagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704627 accagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgt 37704726  T
Q  101 gcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704727 gcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacg 37704826  T
Q  201 atacttttaagttatttaattataacaaatcggnnnnnnnnnnnnnnnncgtatcacttacgtcatttaagttatttaattataacaagttagttatgta 300  Q
    | |||||||||||||||||||||||||||||||                |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37704827 agacttttaagttatttaattataacaaatcggttttttaagattttttcgtatcacttgcgtcatttaagttatttaattataacaagttagttatgta 37704926  T
Q  301 gttgctcaaaaaacaagttagttatgtaagtatt 334  Q
    ||||||||||||||||||||||||||||||||||    
T  37704927 gttgctcaaaaaacaagttagttatgtaagtatt 37704960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 37699152 - 37699349
Alignment:
Q  4 agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataa---gataacaaattcatttaagtagcaatcacagtgagtaatgt 100  Q
    |||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||| | |||||||| |    
T  37699152 agacttttcgaacgtaattagcactaaagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaattt 37699251  T
Q  101 gcttaaaaatacacctgaaatgaagaaaat------aacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc 192  Q
    |||||||||||||||| |||||||||||||      |||||||||||||||||| | ||||||||||||||||||||| || ||| ||||||||||||    
T  37699252 gcttaaaaatacacctaaaatgaagaaaataataacaacattaattgtatttagcaacggagacttagacttcttcaactgaacagactttaaagagc 37699349  T

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Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 37437696 - 37437823
Alignment:
Q  4 agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataa---gataacaaattcatttaagtagcaatcacagtgagtaatgt 100  Q
    |||||||| ||||||||||||||    ||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||| | |||||||| |    
T  37437696 agacttttcgaacgtaattagca----agttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaattt 37437791  T
Q  101 gcttaaaaatacacctgaaatgaagaaaataa 132  Q
    ||||||||||||||||||||||||||||||||    
T  37437792 gcttaaaaatacacctgaaatgaagaaaataa 37437823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 37698806 - 37698864
Alignment:
Q  18 taattagcacgaaagttggaatcttatttcaagttgtgataagataacaaattcattta 76  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37698806 taattagcactaaagttggaatcttattgcaagttgtgataagataacaaattcattta 37698864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 30384256 - 30384298
Alignment:
Q  250 cgtatcacttacgtcatttaagttatttaattataacaagtta 292  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||    
T  30384256 cgtattacttacgtcttttaagttatttaattgtaacaagtta 30384298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 1630048 - 1630012
Alignment:
Q  251 gtatcacttacgtcatttaagttatttaattataaca 287  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  1630048 gtatcacttacgtcttttaagttatttaatcataaca 1630012  T

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Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 192
Target Start/End: Complemental strand, 16841060 - 16840857
Alignment:
Q  4 agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgata------agataacaaattcatttaagtagcaatcacagtgagtaa 97  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||||||||||      |||||||||||||||||||||| |||||||| ||| |||    
T  16841060 agactttttgaacgtaattagcactaa-gttggaatcttattgcaagttgtgatattaataagataacaaattcatttaagtaccaatcacaatgaataa 16840962  T
Q  98 tgtgcttaaaa----atacacctgaaatgaagaaaat------aacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaa 187  Q
    | |||||||||    ||||||||||||||||||||||      |||||||| ||||||||||| |||||||||||||||| |||| | | ||||||||||    
T  16840961 tttgcttaaaaatatatacacctgaaatgaagaaaataataacaacattaaatgtatttagaagcggagacttagacttcgtcaactatccatactttaa 16840862  T
Q  188 agagc 192  Q
    |||||    
T  16840861 agagc 16840857  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 31095092 - 31095132
Alignment:
Q  252 tatcacttacgtcatttaagttatttaattataacaagtta 292  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  31095092 tatcacttacgtcctttaagttatttaattataacaagtta 31095132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 17411089 - 17411131
Alignment:
Q  252 tatcacttacgtcatttaagttatttaattataacaagttagt 294  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  17411089 tatcacttacgtcatttaagttatttaattgtaacaagttagt 17411131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 196287 - 196244
Alignment:
Q  251 gtatcacttacgtcatttaagttatttaattataacaagttagt 294  Q
    ||||||||||||||||||||||||||||||| ||| || |||||    
T  196287 gtatcacttacgtcatttaagttatttaattgtaataatttagt 196244  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 18080600 - 18080645
Alignment:
Q  252 tatcacttacgtcatttaagttatttaattataacaagttagttat 297  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||    
T  18080600 tatcacttacgtcatttaagttatttaattgtaataagttagttat 18080645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 44291463 - 44291420
Alignment:
Q  251 gtatcacttacgtcatttaagttatttaattataacaagttagt 294  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||    
T  44291463 gtatcacttatgtcctttaagttatttaattgtaacaagttagt 44291420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Complemental strand, 12422390 - 12422352
Alignment:
Q  251 gtatcacttacgtcatttaagttatttaattataacaag 289  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  12422390 gtatcacttacgtcttttaagttatttaattttaacaag 12422352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 32857805 - 32857837
Alignment:
Q  262 gtcatttaagttatttaattataacaagttagt 294  Q
    |||||||||||||||||||| ||||||||||||    
T  32857805 gtcatttaagttatttaattgtaacaagttagt 32857837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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