View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8858_high_11 (Length: 220)
Name: NF8858_high_11
Description: NF8858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8858_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 158
Target Start/End: Original strand, 5596075 - 5596227
Alignment:
| Q |
6 |
cacagagtgaagaactcttggcaaaagggtatataaaatcaacaaaaaggagggaactttttgcttgattgatcaagaatcaacaaaagggtatttaaat |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5596075 |
cacaaagtgaagaactcttggcaaaagggtatataaaatcaacaaaaaggagggaactttttgcttgattgatcaagaatcaacaaaagggtatttaaat |
5596174 |
T |
|
| Q |
106 |
tcaacagaaaggagggaaaagagaaaggttttgggtatttaaaatcaatgaaa |
158 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5596175 |
tcaacagaaaggagggaaaagagagaggttttgggtatttaaaatcaatgaaa |
5596227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University