View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8858_low_1 (Length: 556)
Name: NF8858_low_1
Description: NF8858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8858_low_1 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0024 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Original strand, 14720 - 15259
Alignment:
| Q |
1 |
agcaaagcaaataacctcgtgattaatttcaataaaggtgttaacagcattcaacgtgacattagcaccacgaaaatgagctgttattattggaaccttg |
100 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14720 |
agcaaagcacataatctcgtgattaatttcaataaaggtgttaacagcattcaacgtgacattagcaccacgaaaatgagctgttattatcggaaccttg |
14819 |
T |
|
| Q |
101 |
tctattttcaatgttgatttgtagcaaagacttaattgttgattaggatccttaacacgctttaacttaatcatagatgccactgtagattctaactgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14820 |
tctattttcaatgttgatttgtagcaaagactcaattgttgattaggatccttaacacgctttaacttaatcatagatgccactgtagattctaactgag |
14919 |
T |
|
| Q |
201 |
aataaacatcttctggcaaaatagttaatgttgatccagaatcaattattgtatttccttccttatcaggtatcaaggaggagtcattgaatttgataat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14920 |
aataaacatcttctggcaaaatagttaatgttgatccagaatcaattattgtatttccttccttatcaggtattaaggaggagtcattgaatttgataat |
15019 |
T |
|
| Q |
301 |
gcggtcttccacactaaatgcttctaaatttgtgaagtaacctgtattaccaactaagggagtcgagacaacttcagaaccagaaaccactgccgtgtct |
400 |
Q |
| |
|
| ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
15020 |
gtggtctcccacgctaaatgcttctaaatttgtgaagtaacctgtagtaccaactaagggagtcgagacaacttcaggaccggaaactactgccgtgtct |
15119 |
T |
|
| Q |
401 |
ccaaaatttagtctgcttgaactgttagcatttgaaaataatggcacgagacaataagaaaattttccattaatcgaagaactcaattgagatattaacg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15120 |
ccaaaatttagtctgcttgaactgttagcatttgaaaataatggcacgagacaataagaaaattttccattaatcgaagaactcaattgagatattaacg |
15219 |
T |
|
| Q |
501 |
ataaaggtccgcgtccaaaacctattatgccagaggtatt |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15220 |
ataaaggtccgcgtccaaaacctattatgccagaagtatt |
15259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 8894985 - 8894646
Alignment:
| Q |
1 |
agcaaagcaaataacctcgtgattaatttcaataaaggtgttaacagcattcaacgtgacattagcaccacgaaaatgagctgttattattggaaccttg |
100 |
Q |
| |
|
|||||| || |||||||| ||||| |||| |||||||||||||| |||||||||| |||||| ||||||||||||||| ||||| ||||| || |||| | |
|
|
| T |
8894985 |
agcaaaacacataacctcatgattcatttgaataaaggtgttaaaagcattcaacttgacatcagcaccacgaaaatgtgctgtgattatcggcacctcg |
8894886 |
T |
|
| Q |
101 |
tctattttcaatgttgatttgtagcaaagacttaattgttgattaggatccttaacacgctttaacttaatcatagatgccactgtagattctaactgag |
200 |
Q |
| |
|
| | |||||||||||| |||||| |||||||| ||||||||| |||| || ||||||||||||||||||| ||||||| |||| || ||||||||||| |
|
|
| T |
8894885 |
tattttttcaatgttgttttgtaacaaagactcaattgttgagtagggtctttaacacgctttaacttaaccatagatattactgcagtttctaactgag |
8894786 |
T |
|
| Q |
201 |
aataaacatcttctggcaaaatagttaatgttgatccagaatcaattattgtatttccttccttatcaggtatcaaggaggagtcattgaatttgataat |
300 |
Q |
| |
|
|||||||||| | |||||| |||| |||||||| |||||||||| | ||| || || ||||| ||||| || || || || || ||||| ||||| |
|
|
| T |
8894785 |
aataaacatcatttggcaactgggttatcgttgatcctgaatcaattacggcattgccctcattatccggtattaatgatgaatccttcaattttataat |
8894686 |
T |
|
| Q |
301 |
gcggtcttccacactaaatgcttctaaatttgtgaagtaa |
340 |
Q |
| |
|
| ||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
8894685 |
gtggtctccaacactaaatgcttccaaatttgtgaagtaa |
8894646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 536
Target Start/End: Complemental strand, 8894598 - 8894441
Alignment:
| Q |
379 |
accagaaaccactgccgtgtctccaaaatttagtctgcttgaactgttagcatttgaaaataatggcacgagacaataagaaaattttccattaatcgaa |
478 |
Q |
| |
|
|||||||||||||||| | |||||||||| |||| |||||||| | ||||| |||||||| |||| | | | ||||||||||||||| ||| ||| ||| |
|
|
| T |
8894598 |
accagaaaccactgccatatctccaaaatatagtttgcttgaaatattagcctttgaaaacaatgacgctaaacaataagaaaatttcccaccaattgaa |
8894499 |
T |
|
| Q |
479 |
gaactcaattgagatattaacgataaaggtccgcgtccaaaacctattatgccagagg |
536 |
Q |
| |
|
|||| ||| ||||||| | || ||| |||||||||||| || ||||||||||||| |
|
|
| T |
8894498 |
gaacccaactgagatacaattgaaaaatttccgcgtccaaagccaattatgccagagg |
8894441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 105 - 259
Target Start/End: Original strand, 16803139 - 16803293
Alignment:
| Q |
105 |
ttttcaatgttgatttgtagcaaagacttaattgttgattaggatccttaacacgctttaacttaatcatagatgccactgtagattctaactgagaata |
204 |
Q |
| |
|
|||| ||||| | |||||| ||||| | ||||||||||||||| |||| |||||| |||||||| |||||||| |||| ||||||||||| |||||| |
|
|
| T |
16803139 |
tttttaatgtggctttgtaacaaagcttgaattgttgattaggactcttagcacgctctaacttaaccatagatgtcactatagattctaacctagaata |
16803238 |
T |
|
| Q |
205 |
aacatcttctggcaaaatagttaatgttgatccagaatcaattattgtatttcct |
259 |
Q |
| |
|
||||| |||||||||||||||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
16803239 |
aacattctctggcaaaatagttaatgttgttcccgaatcaataattgtatttcct |
16803293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 518
Target Start/End: Original strand, 16803466 - 16803555
Alignment:
| Q |
429 |
catttgaaaataatggcacgagacaataagaaaattttccattaatcgaagaactcaattgagatattaacgataaaggtccgcgtccaa |
518 |
Q |
| |
|
||||||||||||| || || | |||||| |||||||||||| |||||||||| ||||||| ||||| || || |||||||| ||||||| |
|
|
| T |
16803466 |
catttgaaaataacggaaccaaacaatatgaaaattttccaccaatcgaagaattcaattgggatataaaagacaaaggtccacgtccaa |
16803555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 514
Target Start/End: Complemental strand, 19573772 - 19573692
Alignment:
| Q |
434 |
gaaaataatggcacgagacaataagaaaattttccattaatcgaagaactcaattgagatattaacgataaaggtccgcgt |
514 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||| ||| |||||| ||||||| ||||| || || ||||| |||||| |
|
|
| T |
19573772 |
gaaaataatggaactagacaataagaaaattttccaccaattgaagaattcaattgggatataaaagacaaaggcccgcgt |
19573692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 19574072 - 19574019
Alignment:
| Q |
122 |
tagcaaagacttaattgttgattaggatccttaacacgctttaacttaatcata |
175 |
Q |
| |
|
||||||||| | || |||||| | ||||||||||||||||||||||||| |||| |
|
|
| T |
19574072 |
tagcaaagattgaactgttgactgggatccttaacacgctttaacttaaccata |
19574019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University