View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8858_low_12 (Length: 251)
Name: NF8858_low_12
Description: NF8858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8858_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 6408107 - 6408158
Alignment:
| Q |
200 |
atactgcagatgattattgtgcccatggacattggcgaatgctcctgttttt |
251 |
Q |
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| T |
6408107 |
atactgcagatgattattgtgcccatggacattggcgaatgctcctgttttt |
6408158 |
T |
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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 4966873 - 4966789
Alignment:
| Q |
158 |
aattgcaggttgtgaaggatccctttgatgcatcttttggcaatactgcagatgattattgtgcccatggacattggcgaatgct |
242 |
Q |
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| T |
4966873 |
aattgcaggttgtgaaggagccatttgttgcaacttttggcaatactgcagatgatcattgtgcctatagacattgaggaatgct |
4966789 |
T |
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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 9818953 - 9818870
Alignment:
| Q |
12 |
attattcttcctttcatcactgtacaatgt-tgctaatttcttctactgtataaaattcctgctgatggggttcatcttttatg |
94 |
Q |
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| T |
9818953 |
attattcttcctttcatcactatacaatatctgtgaacttcttctagtttataaaattcttgctgatggggttaaccttttatg |
9818870 |
T |
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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 9818771 - 9818727
Alignment:
| Q |
158 |
aattgcaggttgtgaaggatccctttgatgcatcttttggcaata |
202 |
Q |
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| T |
9818771 |
aattgcaggttgtgaaggagccctttgatgcaacttttggtaata |
9818727 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 40404534 - 40404590
Alignment:
| Q |
158 |
aattgcaggttgtgaaggatccctttgatgcatcttttggcaatactgcagatgatt |
214 |
Q |
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| T |
40404534 |
aattccaggttgtgaaggaacccttagatgcaactttaggcaatactgcagatgatt |
40404590 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 249
Target Start/End: Original strand, 9488741 - 9488829
Alignment:
| Q |
158 |
aattgcaggttgtgaaggatccctttgatgcatcttttggcaatactgcagatgattattgtgcccatggacattggcgaatgctcctgttt |
249 |
Q |
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| T |
9488741 |
aattgtaggttgtgaaggagccctttggtgcaacttttggcaatgttgcagatg---attgtgcccatagacagtggggaatgtttctgttt |
9488829 |
T |
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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 23202821 - 23202749
Alignment:
| Q |
158 |
aattgcaggttgtgaaggatccctttgatgcatcttttggcaatactgcagatgattattgtgcccatggacattg |
233 |
Q |
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| T |
23202821 |
aattgtaggttgtgaacgagccctttggtgcaacttttggcaatactgaagatg---attgtgcccatagacattg |
23202749 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 7686064 - 7685986
Alignment:
| Q |
169 |
gtgaaggatccctttgatgcatcttttggcaatactgcagatgattattgtgcccatggacattggcgaatgctcctgtttt |
250 |
Q |
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| T |
7686064 |
gtgaaggagccctttggtgcaacttttggaaatactgca---gatcattgtgcccatggacatcggggaatgcttctgtttt |
7685986 |
T |
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