View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8858_low_15 (Length: 223)
Name: NF8858_low_15
Description: NF8858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8858_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 41122050 - 41122238
Alignment:
| Q |
15 |
gtttggtgtttccaacatggtgaagatgctaaagactattgatgatgaacatctaaaagatgaagcaatgaaatcaattatttttgagtcggatatgcgt |
114 |
Q |
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| T |
41122050 |
gtttggtgtttccaacatggtgaagatgctaaagaatattgatgatgaacatctaaaagatgaagcaatgaaatcaattatctttgagtcggatatgcgt |
41122149 |
T |
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| Q |
115 |
gcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatgttaaagaagtctgttgatgagttagatcatgtaag |
203 |
Q |
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| T |
41122150 |
gcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatgttaaagaagtctgttgatgagttagatcatgtaag |
41122238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 325115 - 325009
Alignment:
| Q |
15 |
gtttggtgtttccaacatggtgaagatgctaaagactattgatgatgaacatctaaaagatgaagcaatgaaatcaattatttttgagtcggatatgcgt |
114 |
Q |
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||||||| |||||||||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||| || |||||||||||||| || |||||| |
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| T |
325115 |
gtttggtatttccaacatggtgaagacgctaaagtctattgatgatgatcatcataaagatgaagcaatgaagtcgattatttttgagtcagaaatgcgt |
325016 |
T |
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| Q |
115 |
gcaagat |
121 |
Q |
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| T |
325015 |
gcaagat |
325009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 3080694 - 3080569
Alignment:
| Q |
72 |
agatgaagcaatgaaatcaattatttttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatgtta |
171 |
Q |
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| T |
3080694 |
agatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttattcatatgtatgcaggtatgata |
3080595 |
T |
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| Q |
172 |
aagaagtctgttgatgagttagatca |
197 |
Q |
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| T |
3080594 |
aataagtcttctaaagagttagatca |
3080569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 3094017 - 3093939
Alignment:
| Q |
72 |
agatgaagcaatgaaatcaattatttttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttatt |
150 |
Q |
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| T |
3094017 |
agatgatgcaatgaaatcaattattattgagtcggatatgcgtgctcaattccctgttggtggatgtcttgatgttatt |
3093939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 3104350 - 3104488
Alignment:
| Q |
15 |
gtttggtgtttccaacatggtgaagatgctaaagactattgatgatgaacatctaaaagatgaagcaatgaaatcaattatttttgagtcggatatgcgt |
114 |
Q |
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|||||||||||||||||| |||||| | ||||||| |||| | || | || ||| || || |||||| | ||||||||||||||||||||||| ||| |
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| T |
3104350 |
gtttggtgtttccaacatagtgaagttactaaagaatattaaagacaacgatgtaagagccgatgcaatggattcaattatttttgagtcggatattcgt |
3104449 |
T |
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| Q |
115 |
gcaagattccctgctactggatgtctcggtgttattcat |
153 |
Q |
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| T |
3104450 |
gcagaattccccgttcatggatgtgttggtgttattcat |
3104488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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