View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8858_low_18 (Length: 201)
Name: NF8858_low_18
Description: NF8858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8858_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 9e-72; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 26453929 - 26453764
Alignment:
| Q |
20 |
taaggttgatgggaggaattgtgttggagattgtagaaaaggctttgcaattgaagccttacatnnnnnnnttgctatagcaaaaaagatacaaataatg |
119 |
Q |
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| T |
26453929 |
taaggttgatgggaggaattgtgttggagattgtagaaaaggctttgcaattgaagccttacataaaaaaattgctatagcaaaaaagatacaaataatg |
26453830 |
T |
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| Q |
120 |
agatgattcatcttcattttgttttgaaaattgaacttatcaatggcttatgttgatgctagtatt |
185 |
Q |
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| T |
26453829 |
agatgattcatcttcattttattttgaaaattgaacttatcaatgacttatgttgatgctagtatt |
26453764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 26504184 - 26504005
Alignment:
| Q |
21 |
aaggttgatgggaggaattgtgttggagattgtagaaaaggctttgcaattgaagcct------------tacatnnnnnnnttgctatagcaaaaaaga |
108 |
Q |
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| T |
26504184 |
aaggctgatgggaggaattgtgttggagatggtagaaaaggctttgcaattgaagcatcctcagcagcattacataaaaaaattgttatagcaaaaaaga |
26504085 |
T |
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| Q |
109 |
tacaaataatgagatgattcatcttcattttgttttgaaaattgaac---ttatcaatggcttatgttgatgctagtatt |
185 |
Q |
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| T |
26504084 |
tacaaataatgagatgattcatcttcattttgttttgaaaattgaacttattatcaatggcttatgttgatgttagtatt |
26504005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 91 - 185
Target Start/End: Original strand, 26521658 - 26521752
Alignment:
| Q |
91 |
ttgctatagcaaaaaagatacaaataatgagatgattcatcttcattttgttttgaaaattgaacttatcaatggcttatgttgatgctagtatt |
185 |
Q |
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| T |
26521658 |
ttgctatagcaaaaaagatacatataatgagatgattcatcttcattttgttttaaaaattgaacttatcaatggcttatattgatgttagtatt |
26521752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 26521647 - 26521576
Alignment:
| Q |
114 |
ataatgagatgattcatcttcattttgttttgaaaattgaacttatcaatggcttatgttgatgctagtatt |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
26521647 |
ataatgagatgattcatcttcattttgttttgaaaattgaacttatcaatggcttatattaatgctagtatt |
26521576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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