View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8858_low_2 (Length: 523)
Name: NF8858_low_2
Description: NF8858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8858_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 32 - 510
Target Start/End: Original strand, 14863726 - 14864204
Alignment:
| Q |
32 |
acctgaatgcgacctttttgtgcgaacttggagacagttccacgttcagccaagttctttagctccccatgcctatcacgctccaactgcataagcaaat |
131 |
Q |
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| T |
14863726 |
acctgaatgcgacctttttgtgcgaacttggagacagttccacgttcagccaagttctttagctccccatgcctatcacgctccaactgcataagcaaat |
14863825 |
T |
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| Q |
132 |
cattgaaagctcgacgtcctctaattcttgttgaacaagtaacctgaggaaaggctctttgttctgaaagttctggtgcaaaatctttacgaggagaact |
231 |
Q |
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| T |
14863826 |
cattgaaagctcgacgtcctctaattcttgttgaacaagtaacctgaggaaaggctctttgttctgaaagttctggtgcaaaatctttacgaggagaact |
14863925 |
T |
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| Q |
232 |
tgccacactgccaccaccacatccttcatgatcattttcatcaccagaagatggaggtgaactctgagtttgacttgtagcagtgagtttctttatgata |
331 |
Q |
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| T |
14863926 |
tgccacactgccaccaccacatccttcatgatcattttcatcaccagaagatggaggtgaactctgagtttgacttgtagcagtgagtttctttatgata |
14864025 |
T |
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| Q |
332 |
tcagcaacactaactctatcactttccgatgaattcttcctactttgttcaactgaacacaacctactctgatcacctgtcttatcagaatcccaatcag |
431 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14864026 |
tcagcaacactaactctatcactttccgacgaattcttcctactttgatcaactgaacacaacctactctgatcacctgtcttatcagaatcccaatcag |
14864125 |
T |
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| Q |
432 |
tgaacgaagaaaacgaaaacgattcttcgttccctgatgataacggtccttcaaaaccctctcctatttccgaccctct |
510 |
Q |
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| T |
14864126 |
tgaacgaagaaaacgaaaacgattcttcgttccctgatgataacggtccttcaaaaccctctcctatttccgaccctct |
14864204 |
T |
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