View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8858_low_3 (Length: 433)
Name: NF8858_low_3
Description: NF8858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8858_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 14327577 - 14327971
Alignment:
| Q |
19 |
ggaataaagattatggttttgcttttttcttgaggaataaaatgaaactagtgggaaagtgaaaagtaccgaggagaagaaagaataaagagaggaattg |
118 |
Q |
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| T |
14327577 |
ggaataaagattatggttttgcttttttcttgaggaataaaatgaaactagtgggaaagtgaaaagtactgaggagaagaaagaataaagagaggaattg |
14327676 |
T |
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| Q |
119 |
gaaaagnnnnnnnngcacttagaaagaatttaaggaaaaaagaagtttggtttaggttaagtggaaaagagcttgtttgagaagtttgtagaaaagtgag |
218 |
Q |
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| T |
14327677 |
gaaaagtttttt--gcacttagaaagaatttaaggaaaaaagaagtttggtttaggttaagtggaaaagagcttgtttgagaagtttgtagaaaagtgag |
14327774 |
T |
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| Q |
219 |
gggacagaaggaaagtaggttgaaagagtttgaggacttttaaatatatagggaattttgatgagcgtgtaaaaatgattgtagtgnnnnnnnagatata |
318 |
Q |
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| T |
14327775 |
gggacagaaggaaagtaggttgaaagagtttgaggacttttaaatatatagggaattttgatgagcgtgtaaaaatgattgtagtgtttttttagatata |
14327874 |
T |
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| Q |
319 |
gaaatggaaattactttcaagaataattgcacatgcagttgctacaattttaatgaaaagtgtgatgataacaaaatgatctataaaccaaactagt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14327875 |
gaaatggaaattactttcaagaataattgcacatgcagttgctacaattgtaatgaaaagtgtgatgataacaaaatgatctataaaccaaactagt |
14327971 |
T |
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