View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8858_low_4 (Length: 423)
Name: NF8858_low_4
Description: NF8858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8858_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 21 - 406
Target Start/End: Original strand, 24846577 - 24846960
Alignment:
| Q |
21 |
ccttagttttatcttcaaatgaa-tgcgtagaatgagtat-ttcttcaaagtaattgatttatacagtaagcttataaagtcgatatttttgtttaccat |
118 |
Q |
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| T |
24846577 |
ccttagttttatcttcaaatgaaatgcgtagaatgagtatcttcttcaaagtaattgatttatacagtaaacttataaagtcgatatttt-gtttaccat |
24846675 |
T |
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| Q |
119 |
attatgggtacgatattttcactaccgttcaacagtttttaatctatata----aagtaatatgtgggacatatatatatccaagagttattaatcgaaa |
214 |
Q |
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| T |
24846676 |
attatgggtacgatattttcactaccgttcaacagtttttaatctatgtaaagtaagtaatatgtgggacatatatatatccaagagttattaatcgaaa |
24846775 |
T |
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| Q |
215 |
acctaaccatttgcttaagcgtttaaatcacttaaaacttgaaactatccattattgtttataaaattcaaaatgtgaactagttgtaagatatttataa |
314 |
Q |
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| T |
24846776 |
acctgaccattt------gcgtttaaatcacttacaacttg-aactatccattattgtttataaaattcaaaatgtgaactggttgtaagatatttataa |
24846868 |
T |
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| Q |
315 |
tcttttttgacgtgcaagaagtagaaattgtatacatgttagacaggtattaatttattgtaagatgtcctccttcttttcttggttacaac |
406 |
Q |
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| T |
24846869 |
tcttttttgacgtgcaagaagtagaaattgaatacatgttagacatgtattaatttattgtaagatgtcgtccttcttttcttggttacaac |
24846960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 191 - 376
Target Start/End: Original strand, 24837555 - 24837740
Alignment:
| Q |
191 |
atatccaagagttattaatcgaaaacctaaccatttgcttaagcgtttaaatcacttaaaacttgaaactatccattattgtttataaaattcaaaatgt |
290 |
Q |
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| T |
24837555 |
atatctaagagttaatgatcgaaaacatgaccatttatttaagggtttaaatcccttacaactagaa-ctatccattattgttgataaaactcaaaatgt |
24837653 |
T |
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| Q |
291 |
gaactagttgtaagatatttataatcttttttgacgtgcaagaagtagaaattg--tatacatgttagacaggtattaatttattgta |
376 |
Q |
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| T |
24837654 |
gaactggttttaagatatttataat-ttttttgacgagcaggaagtagaaattgaatatacatgttagacatgtattaatttattgta |
24837740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 10 - 164
Target Start/End: Original strand, 24837331 - 24837486
Alignment:
| Q |
10 |
attattctatcccttagttttatcttcaaatgaat-gcgtagaatgagtat-ttcttcaaagtaattgatttatacagtaagcttataaagtcgatattt |
107 |
Q |
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|||||||||||||||||||||| |||||| |||| |||||||||| |||| ||||||||||||||||| || |||||||| ||||| |||| ||||||| |
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| T |
24837331 |
attattctatcccttagttttagcttcaattgaaaagcgtagaatg-gtatcttcttcaaagtaattgagttgtacagtaatcttatcaagttgatattt |
24837429 |
T |
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| Q |
108 |
ttgtttaccatattatgggtacgatattttcactaccgttcaacagtttttaatcta |
164 |
Q |
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| T |
24837430 |
ttgtttacgatattattagtacgatattttcactaccgttcaacggtgtttaatcta |
24837486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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